Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00327 ATGGATTCCATTGCCAAAGCACGAATGGCTTCTCCCCCAAGAACACCGACTGGTCTTATTGTTCCGAACCTATCTCCATATTCTCCGTCTTCTTCCTCTTCACCGCCTGCCTTTTCTTCATCAGTCTCTCGGTCGAGCAATATTCTGCCGCGGGCGTCTCCTCCGGCCGTCGTACTCAGCCCATGTGCAGCGTGCAAAATTCTTCGGCGGCGATGCGTGGACAAGTGCGTTTTAGCGCCGTATTTTCCTCCATCTGAACCTCTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCAAGCAACATAATCAAGTTATTGCAGGCATATATTCTTTTTTCCTTTTATTCATTTTTAGAACTTCCAGAGGATCAAAGAGCAGATGCAGTGAGCAGTATGGTGTACGAGGCAAACGCGAGAATCAGAGACCCGGTGTACGGAAGCGCCGGCGCCATTTGCCACCTCCAGAAGCAAGTGAGCGAGCTTCAGACCCAGCTGGCCAGAGCTCAGGCCGACCTACTCAACATGCAGCTGCAGCAGAGTAATCTCATCGACTTGGTCTGCGTGGAAATGGGCCACTCATTGGAGGAGAACCAAACTCCGTCGCCATTTTCACACCTCCATCAGAACTCCCCCGGCACCACGCCTTTTCTCAATGATCCCTTCACCTCGGGGCCTCTTTGGACATAA 687 51.53 MDSIAKARMASPPRTPTGLIVPNLSPYSPSSSSSPPAFSSSVSRSSNILPRASPPAVVLSPCAACKILRRRCVDKCVLAPYFPPSEPLKFTIAHRVFGASNIIKLLQAYILFSFYSFLELPEDQRADAVSSMVYEANARIRDPVYGSAGAICHLQKQVSELQTQLARAQADLLNMQLQQSNLIDLVCVEMGHSLEENQTPSPFSHLHQNSPGTTPFLNDPFTSGPLWT 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2448170 2449332 + Bma016605.1 Bma03g00327 79000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00327 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 44 227 - -
Bma03g00327 228 Coils Coil 158 178 - -
Bma03g00327 228 MobiDBLite consensus disorder prediction 1 20 - -
Bma03g00327 228 MobiDBLite consensus disorder prediction 198 228 - -
Bma03g00327 228 Pfam Lateral organ boundaries (LOB) domain 61 169 IPR004883 -
Bma03g00327 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 227 - -
Bma03g00327 228 ProSiteProfiles LOB domain profile. 60 172 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00327 Bma08g00958 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00327 Bma-Chr3:2448170 Bma08g00949 Bma-Chr8:48484112 1.61E-94 dispersed
Bma14g00470 Bma-Chr14:5340036 Bma03g00327 Bma-Chr3:2448170 1.68E-69 wgd
Bma03g00327 Bma-Chr3:2448170 Bma08g00958 Bma-Chr8:48612668 9.74E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56980 PF03195 LOB 1.70E-36 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00327 - - mnt:21397274 226.483