Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00362 ATGGTTTTTTCTACTCTCTGCATTCGCTTAATATGCCTCTTGAGCTTGGTTTTTCCCATTTCTATGGCGGCCCCAGTGAATCATACTCTTCTTCATCGGCACCCGTACCCTGATGCTGTTTCTGAAGTAGTTCATCAGAGAGTAAAACATTCTGTATCCAGAAGAGAAATGCTGAGTCTCCAATCTAAGAACCAAGCCACTTGTCTCACAGGAAACCCAATCGACGACTGTTGGCGGTGCGACCAAAACTGGCAAACTAACCGGCAAAAGCTCGCCGACTGCGGCATTGGGTTCGGCCAAGACGCAATGGGAGGAAAAGGCGGCCAGATCTACACCGTCACCGACTCCTCCGATTCAAATCCGGCGAACCCAACTCCGGGAACTCTCCGGTACGCCGTCATCCAAGAAGAACCCCTATGGATCATCTTCGCTGGCGACATGACAATAAACCTAAAACACGAGCTTATCTTCAACAGCTTCAAAACCATCGACGGCCGGGGCGCCTCCGTCCACATTACTGGCGGGGGCTGCATAACCCTTCAGTACGTATCAAACGTAATAATCCACAACATCAACGTCCACAATTGTAAGCCAACGGGAAATACAAACATACGGTCGAGCCCAACCCACGTAGGATTCCGCGGCAAGTCAGACGGCGATGGTATTTCCATCTTCGGCGCCAACAAAATCTGGATCGACCATTGCTCGCTCTCATACTGCACGGACGGCTTGATCGACGCAATCATGGGGTCCACTGGGATAACTATTTCGAACAACTATTTCTCGCATCATGACGAGGTGATGCTATTGGGAGCCGACGATGGGTACGCGCCGGACACCGGGATGCAGGTGACCATAGCTTTTAACCACTTCGGTGTGGCGCTGGTGCAGCGTATGCCTCGGTGTAGACTAGGGTATATACACGTGGTGAATAATGATTTTACGCAGTGGGAGATGTATGCTATCGGCGGTAGTGCTAACCCCACCATAAACAGTCAGGGGAATAGATACACCGCTCCGGCTGACACTAATGCCAAAGAGGTGACGAGGCGTTTGGATACAGGGGAGGTGGAGTGGACGGACTGGAACTGGAGAACGGTGGGGGACATCATGGTAAACGGAGCATTTTTTGTGCCGTCAGGCGAGGGTCTTAGCACTCAGTACAGTAAAGCTTCCAGTGTGGATCCAAAATCAGTCGGCCTGATTGATCAGCTCACCATCAACGCTGGTGTCTTTGGTGGCCTCAGAGATAATAGTAGGAGCAGCAGTGCCTCGACAAGTAACGGAGGGTCGACTGGGGAAGGGGACCTTATTGGAATGATCTTTGCGGGCGCTAACGACGGAGCAGTGGATGCACCTGCATCTTGGATTAGCTCTCTCTTTCACTGTCTCCTAATTCTCTTAACTTTGAGTTTTGCCACCTCTCTCATTCCCCAGTTGGGTTGTAGGAATTAA 1455 51.07 MVFSTLCIRLICLLSLVFPISMAAPVNHTLLHRHPYPDAVSEVVHQRVKHSVSRREMLSLQSKNQATCLTGNPIDDCWRCDQNWQTNRQKLADCGIGFGQDAMGGKGGQIYTVTDSSDSNPANPTPGTLRYAVIQEEPLWIIFAGDMTINLKHELIFNSFKTIDGRGASVHITGGGCITLQYVSNVIIHNINVHNCKPTGNTNIRSSPTHVGFRGKSDGDGISIFGANKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGADDGYAPDTGMQVTIAFNHFGVALVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADTNAKEVTRRLDTGEVEWTDWNWRTVGDIMVNGAFFVPSGEGLSTQYSKASSVDPKSVGLIDQLTINAGVFGGLRDNSRSSSASTSNGGSTGEGDLIGMIFAGANDGAVDAPASWISSLFHCLLILLTLSFATSLIPQLGCRN 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2697882 2700342 - Bma016641.1 Bma03g00362 79035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00362 484 Gene3D - 71 413 IPR012334 -
Bma03g00362 484 Pfam Pectate lyase 154 335 IPR002022 -
Bma03g00362 484 PANTHER PECTATE LYASE 18-RELATED 7 429 IPR045032 GO:0030570
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Bma03g00362 484 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Bma03g00362 484 SUPERFAMILY Pectin lyase-like 60 389 IPR011050 -
Bma03g00362 484 SMART amb_all 146 343 IPR002022 -
Bma03g00362 484 PANTHER PECTATE LYASE 7 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00362 Bma-Chr3:2697882 Bma04g01050 Bma-Chr4:19126066 4.39E-177 dispersed
Bma04g00585 Bma-Chr4:5602715 Bma03g00362 Bma-Chr3:2697882 0 transposed
Bma04g00648 Bma-Chr4:6245286 Bma03g00362 Bma-Chr3:2697882 2.86E-32 transposed
Bma03g00061 Bma-Chr3:510136 Bma03g00362 Bma-Chr3:2697882 0 wgd
Bma03g00362 Bma-Chr3:2697882 Bma08g00920 Bma-Chr8:48179296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00362 K01728 - zju:107413230 685.256