Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00419 ATGGCTGATGGAAGTCCGAGGACTGATATATCTACCGATGTGGAAACAGACGACAAAAATATGATGGTCGAAAGAGGTCAATTGAATGCTGTTGTAGCATTTGATTCTAGCGACAGATCAAATGATAAAAGCGATCAGAAGACTCTTCGTCGGCTTGCACAAAATCGTGAGGCGGCTAGAAAAAGTCGACTGAGGAAAAAAGCATATGTTCAACAGTTGGAGAGCAGTCGTTTGAAGCTCACCCAGCTCGAGCAGGAGCTTCAGCGTGCACGACAACAGGGAATATTCATATCCGGTTCAGGAGATCAAGCCCATTCTATGAGTGGAAACGGAGCGATGGCTTTTGACGTGGAATATGGGCGGTGGCTTGAAGAACAAAATCGACAAATTAATGAACTGAGATCTGCAGTCAATTCTCACGCAAGTGAAACAGAACTTCGAATCATCGTTGATGGTGTAATGGCGCATTATGAAGAGATTTTCAAGCTGAAGGGCACTGCAGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCGGCCGAACGGTGTTTCCTGTGGTTGGGCGGTTTCCGGTCATCTGAGCTTCTTAAGCTTCTTGCGAATCAATTGGAGCCTCTGACGGAGCAGCAACTGGCAAACATTACCAACTTGCAACAGTCGTCGCAGCAGGCTGAAGATGCATTATCACAAGGCATGGATGCATTGCAACAATCCCTATCAGAGACATTGTGCAGTGGCTCTCTTGGCTCCTCGGGATCATCTGGCAATGTGGCCAACTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGCACTCTCGAGGGATTTATTCGCCAGGCTGATAATTTGCGGCTACAAACACTCCAACAAATGCATCGGATATTGACGACTCGGCAGTCTGCACGAGCACTTCTTGCGATACACGATTACTTCTCCAGATTACGAGCTCTTAGTTCTCTCTGGCTTGCCAGGCCTAGAGAGTAG 999 47.15 MADGSPRTDISTDVETDDKNMMVERGQLNAVVAFDSSDRSNDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISGSGDQAHSMSGNGAMAFDVEYGRWLEEQNRQINELRSAVNSHASETELRIIVDGVMAHYEEIFKLKGTAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLANITNLQQSSQQAEDALSQGMDALQQSLSETLCSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3186899 3189208 - Bma016699.3 Bma03g00419 79092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00419 332 SMART brlzneu 43 106 IPR004827 GO:0003700|GO:0006355
Bma03g00419 332 PANTHER TRANSCRIPTION FACTOR TGA9 1 332 - -
Bma03g00419 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351|GO:0043565
Bma03g00419 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700|GO:0006355
Bma03g00419 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351|GO:0043565
Bma03g00419 332 Gene3D - 46 95 - -
Bma03g00419 332 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700|GO:0006355
Bma03g00419 332 Pfam Basic region leucine zipper 43 89 IPR004827 GO:0003700|GO:0006355
Bma03g00419 332 Coils Coil 123 143 - -
Bma03g00419 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700|GO:0006355
Bma03g00419 332 Coils Coil 66 93 - -
Bma03g00419 332 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 332 - -
Bma03g00419 332 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00856 Bma-Chr1:8069629 Bma03g00419 Bma-Chr3:3186899 3.14E-95 dispersed
Bma02g00255 Bma-Chr2:2711700 Bma03g00419 Bma-Chr3:3186899 5.11E-92 dispersed
Bma03g00419 Bma-Chr3:3186899 Bma10g00236 Bma-Chr10:2162224 2.33E-180 dispersed
Bma06g00131 Bma-Chr6:1756413 Bma03g00419 Bma-Chr3:3186899 8.24E-89 transposed
Bma15g00081 Bma-Chr15:916771 Bma03g00419 Bma-Chr3:3186899 5.53E-155 transposed
Bma03g00015 Bma-Chr3:219471 Bma03g00419 Bma-Chr3:3186899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56985 PF14144 DOG1 1.30E-32 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00419 K14431 - zju:107428714 559.681