Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00429 CGGGGGTCTTACGGTCTTGGAATGGAGGCGAAGCAGACGAAGAAGGTAACTGAAGAAGCAGGCGATGAAAGTAGGGAGAGGAAGTGGAAAAAGAGAGGGACTTCCTCGTCTTCTGTTTTCATTAACAATCTCGACGATGGGTGTCTCATGCACATCTTCAGTTTCCTCTCTCCCATCCCAGAACAAAAGATGATTTTTTTTTTTCCGCAAACTCTGTCACCTATCGTCATTGAGTATGCAGATCGGTATAACTCCGCCCTCGTTTGCCACAGATGGCTTTACTTAGCTTGTCATCCTCGTTTGTGGTTAAGAGTAGACAGATCCCTCAAAGATTCATCCGAACCTGGTGTTTTCCCTAACATTGAGATAGCTGTAGCTGCAGCTAGGCCTGGAGATACAATTCTAATTGCTGCTGGTGGAAGTTATCCTGCTTCCAATATTCAAATTAAAAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGATGATACGACACTTGTCTGTCCTCGTGGAGCTGAAAGTGCATTAGAGTTCCTCTGCACAAGCAAACTGGCCAATCTAACAGTGAAGGCAGAGCTCGGGTGTTGCCTTCTTCACAAGAAAGGAAGACTAACAATTGATGGATGCATTCTTCAATGTGAATCAAACCCTCTAGATTACCTTTCCTGCCCAATCGTCACCACTGCCAATGGCCGTAATTCATTCCCCTCCGCCGTCAAGTCCACCCGCTCGGACGGAGTCTCCGTCTCCCAAACCCGGATAGAAGGAGGAGCAAAAGCCGTCCTAACAAGCGGAGACTTGGCTTTGCAGCGGGTTCGAGTCATTTACGCTCGAACTTGTTCAAATGGTCATACGCTGTGCTCTGGTTGCAAGCCCAGGGTGCACAACCGGTGCCCCACTTGTAGGCATGAACTTGGCAATATTAGATGTCTAGCGCTGGAGAAGGTGGCTGCATCTCTAGAACTTCCATGTAAATACGAGAGCTTCGGTTGCTTGGGCATTTATCCTTATTACAGCAAGCTTAAACATGAATCCCAGTGTGTTTATAGGCCTTATAATTGTCCCTATGCTGGATCAGAATGTACAGTCATTGGTGATATACCTTATCTGGTGTCACACCTAAAGGATGATCATAATGTTGATATGCATACTGGCAGTACTTTCAACCATCGTTATGTCAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTTTGGGCAGTACTTCTGTCTGCATTTTGAAGCATTTCAGCTTGGAATGGCTCCTGTCTACATAGCTTTTTTGCGTTTCATGGGTGATGATCATGAGGCAAAGAACTACAGCTACAGTCTGGAGGTTGGGGGAAATGGAAGAAAGATGATTTGGCAAGGAGTTCCAAGGAGTATTAGGGACGTCTTATCAGTGAAGCTAGATGAGTGGAGTGATGAACAAGTTGATTCATTGATGAATAAGGGTGGTAATACTACAGTAAACAAGAAGTATGAAGCTTGCATCCCAGATAGCCAGAAAAAACCAAAACCGGAATCCAGTATAGAAGAACGATGTGATTTTATAAGAAACAAATATGAGCTGCTAAAGTTTTTGAGCCAGGAAGATCAACCAAAGTCTCATAAAAGGAATTCATCTTCTTCCCAAGTTTCTGTAAGCAATAATTCCACACAAGAGAAGAAACAATATGAAAAGCAAGCAACGAAACATCGCATTGGGAATGCATTTAGAAACAGCTGGGGAAGGAAAGATTCCGAATACAAGATCTCTAAGAAGACCAACTCCTTGGTGGCAAGCAATTCAATGGCGGGAATGGTTGAATTTGTTGGCTTGATCAAGGTCAATGTAGTGAGAGGCACAAATCTAGCTGTCAGAGACGTGATTACAAGCGACCCTTATGTGATTCTCACATTAGGCCATCAATCCGTGAAGACACGTGTGATCAAGAGTAATCTCAATCCAGTCTGGAACGAGAGCCTTATGCTTTCAATTCCAGAGCACATTCCTCCTCTAAAAATTCTTGTTTACGACAAAGACACGTTTTCAACTGACGACTTCATGGGGGATGCAGAAATCGACATTCAGCCACTTCTAACGGCAGCCAAGGCGTGCGAAACTTCTACAATCCACGAGTCGATTCAGCTCGGGAAGTGGATTGCAAGCAAAGAGAACACACTTGTAAAAGACGGTGTAATCAACCTAACAGATGGAAGGGTGAGACAGGACATCTCCCTCCGCCTAGAAAACGTCGAGAGGGGCGTGCTGGAGATGGAGCTCGAATGCGTTCCTCTCACTCAATAG 2316 44.91 RGSYGLGMEAKQTKKVTEEAGDESRERKWKKRGTSSSSVFINNLDDGCLMHIFSFLSPIPEQKMIFFFPQTLSPIVIEYADRYNSALVCHRWLYLACHPRLWLRVDRSLKDSSEPGVFPNIEIAVAAARPGDTILIAAGGSYPASNIQIKKPLCLIGGGELPDDTTLVCPRGAESALEFLCTSKLANLTVKAELGCCLLHKKGRLTIDGCILQCESNPLDYLSCPIVTTANGRNSFPSAVKSTRSDGVSVSQTRIEGGAKAVLTSGDLALQRVRVIYARTCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYESFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPYLVSHLKDDHNVDMHTGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSYSLEVGGNGRKMIWQGVPRSIRDVLSVKLDEWSDEQVDSLMNKGGNTTVNKKYEACIPDSQKKPKPESSIEERCDFIRNKYELLKFLSQEDQPKSHKRNSSSSQVSVSNNSTQEKKQYEKQATKHRIGNAFRNSWGRKDSEYKISKKTNSLVASNSMAGMVEFVGLIKVNVVRGTNLAVRDVITSDPYVILTLGHQSVKTRVIKSNLNPVWNESLMLSIPEHIPPLKILVYDKDTFSTDDFMGDAEIDIQPLLTAAKACETSTIHESIQLGKWIASKENTLVKDGVINLTDGRVRQDISLRLENVERGVLEMELECVPLTQ 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3263017 3281378 + Bma016708.1 Bma03g00429 79102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00429 771 MobiDBLite consensus disorder prediction 1 30 - -
Bma03g00429 771 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 470 771 - -
Bma03g00429 771 Pfam Putative GTPase activating protein for Arf 467 538 IPR001164 GO:0005096
Bma03g00429 771 SMART arf_gap_3 434 541 IPR001164 GO:0005096
Bma03g00429 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 375 IPR013083 -
Bma03g00429 771 ProSiteProfiles Zinc finger SIAH-type profile. 320 380 IPR013010 GO:0008270
Bma03g00429 771 SUPERFAMILY F-box domain 30 122 IPR036047 GO:0005515
Bma03g00429 771 SUPERFAMILY ArfGap/RecO-like zinc finger 466 537 IPR037278 -
Bma03g00429 771 ProSiteProfiles C2 domain profile. 597 712 IPR000008 -
Bma03g00429 771 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 612 709 IPR035892 -
Bma03g00429 771 SMART C2_3c 616 711 IPR000008 -
Bma03g00429 771 Gene3D - 35 106 - -
Bma03g00429 771 SUPERFAMILY Pectin lyase-like 111 260 IPR011050 -
Bma03g00429 771 MobiDBLite consensus disorder prediction 548 566 - -
Bma03g00429 771 CDD C2_ArfGAP 614 758 - -
Bma03g00429 771 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 470 771 IPR044518 GO:0005096|GO:0005543
Bma03g00429 771 Gene3D C2 domain 614 768 IPR035892 -
Bma03g00429 771 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 376 492 IPR008974 GO:0005515
Bma03g00429 771 Pfam C2 domain 616 708 IPR000008 -
Bma03g00429 771 Pfam Seven in absentia protein family 309 474 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bma03g00429 771 MobiDBLite consensus disorder prediction 12 30 - -
Bma03g00429 771 MobiDBLite consensus disorder prediction 538 573 - -
Bma03g00429 771 SUPERFAMILY TRAF domain-like 320 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00429 Bma-Chr3:3263017 Bma10g00166 Bma-Chr10:1436823 4.27E-111 dispersed
Bma14g00586 Bma-Chr14:6366712 Bma03g00429 Bma-Chr3:3263017 6.15E-12 dispersed
Bma14g01115 Bma-Chr14:14028103 Bma03g00429 Bma-Chr3:3263017 4.13E-14 dispersed
Bma03g00429 Bma-Chr3:3263017 Bma06g01156 Bma-Chr6:48463528 7.70E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00429 K12486 - csv:101221541 462.225