Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00439 ATGTTTCAAGGGGATGGATCATCATCTTCATCAGTGACAGCACCAACTCTACTCGTCCCATGGACCCTATCTCCTGGAATAGGATCACCATACCCGTTTCTGAGAGAGCTCAAATCAGAAGAAAGAGGCCTGTGTCTGATTCATCTTCTCCTCGCCTGTGCTAGCCATGTTGCGGCTGGCCATATGGAATATGCAAATATTGGGCTTGAGCATATTTCCCAACTTGCCTCTCCTGACGGTGACACTATGCAGCGAATTGCCGCTTATTTCACGGAAGCACTTGCCGATCGAGTTCTCAAAGCTTGGCCTGGTTTACACAAAGCTCTGAATTCGACCAAAATATCTTCAGTTTCAGAGCAAATCTTTGTCCAAAGACTCTTCTTTGAAATCTGCCCCTTCTTCAAGCTTGCATATCTGATCACAAACCAGGCGATTGTAGAAGCAATGAAAGGAGAAAAGATGATTCATATTATCGATTTTAATTCTTTTGAGCCCGCCCAGTGGATTAATCTTCTTCAGACATTGAAGGAGCGGCCGGAAGGGCCACCCCATGTGAAAATTACTGGGATTCATGAGCAGAAAGAAGTGCTGGAACAAATGGCTATTCGGTTGAACGACGAAGCCGAAAAATTAGACATTCCCTTTCAGTTCATTTCAATAGTGAGCAGATTAGAAAACCTAGATTTCGAAAGTTTGCGTGTGAAGACTGGCGAAGCACTTGCAGTCAGCTCTGTTCTAGAGCTTCACTCTCTTTTGGCCAAGGACGAGGAGAGAAAAAGCTCACCATCGACTTCCACCAATATTCAGAAAATTTTACATGTTAAACAGCGAACTTTGGGAGAGTGGTTCGAGACAGACTCGATGCCGCTTTTCAGCAGTCCCGATTCGGCATCCACATCTTCCCCATTGTCGCTAAGTCCTTCACAGAAGATGGGAAGTTTCCTAAACGCACTATGGGGACTTTCGCCGAAAATAATGGTAATAACGGAGCAAGAATCTAACCTCAATGGTTGTACTTTTATGGAGAGGGTCAGGGAAGCTTTAAACTTCTACGCAGCTTTGTTCGATTGCTTGGAATCGACGGTCTCTAGATCATCGCTGGAGAGACAGAAGGTCGAGAAGATGCTATTTGGAGAAGAAATCAAGAACATCATTGCATGTGAGGGAGCTGAGAGGAAAGAAAGGCATGAGAAGCTCGAGAAATGGATTTTACGGCTTGAAGTTGCAGGGTTCGGAAGGGTGCCCTTAAGCTACCATGGTAGGTTGCTGGCCGGTAAGCTGTTGCAGAACTACGGCTATGACGGGTATAAGATTAAGGAAGAGAATGGATGTTTGTTTATATGTTGGCAGGATAGGCCGCTCTTCTCGGTCTCGGCATGGAGCCTTCGGAGGAATGACTGA 1401 45.61 MFQGDGSSSSSVTAPTLLVPWTLSPGIGSPYPFLRELKSEERGLCLIHLLLACASHVAAGHMEYANIGLEHISQLASPDGDTMQRIAAYFTEALADRVLKAWPGLHKALNSTKISSVSEQIFVQRLFFEICPFFKLAYLITNQAIVEAMKGEKMIHIIDFNSFEPAQWINLLQTLKERPEGPPHVKITGIHEQKEVLEQMAIRLNDEAEKLDIPFQFISIVSRLENLDFESLRVKTGEALAVSSVLELHSLLAKDEERKSSPSTSTNIQKILHVKQRTLGEWFETDSMPLFSSPDSASTSSPLSLSPSQKMGSFLNALWGLSPKIMVITEQESNLNGCTFMERVREALNFYAALFDCLESTVSRSSLERQKVEKMLFGEEIKNIIACEGAERKERHEKLEKWILRLEVAGFGRVPLSYHGRLLAGKLLQNYGYDGYKIKEENGCLFICWQDRPLFSVSAWSLRRND 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3354842 3356242 - Bma016717.1 Bma03g00439 79112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00439 466 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 1 463 - -
Bma03g00439 466 ProSiteProfiles GRAS family profile. 37 461 IPR005202 -
Bma03g00439 466 Pfam GRAS domain family 46 460 IPR005202 -
Bma03g00439 466 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 463 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00439 Bma-Chr3:3354842 Bma14g00764 Bma-Chr14:8465286 0 dispersed
Bma03g00439 Bma-Chr3:3354842 Bma01g00461 Bma-Chr1:3829901 2.45E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56990 PF03514 GRAS 2.00E-135 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00439 - - cmo:103489486 736.873