Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00454 | ATGTCTAATTCGGAAGGGGGTAATAACGGCATCGTCAACGGCGCTTTAATTGACCCTCAGAGGCAACAGACGCCGGCGAATGGGGCGCTTGTTGTCAAAAAGCCCCCCTCTAAAGACCGCCACAGTAAGGTCGACGGCCGAGGTCGCCGTATTCGGATGCCGATCATTTGCGCCGCCCGTGTGTTTCAGCTCACTAGAGAGCTTGGACACAAGTCCGATGGTCAGACCATCGAGTGGCTTCTAAGGCAAGCTGAGCCTTCGATCATAGCTGCGACGGGAACTGGTACTACTCCTGCCAGCTTCTCTTCAGTTTCCGTATCCGTCAGAGGCGGCGGCGTCGGTTCGAGTTCGCTCTCTACCTCTTCCACTACGTCCTCTCTATCTCTTTCTCGGCCCCAGGCCTTCTCCGGACCCACCCCCTTTATTCTCGGTAAACGTGTAAGAACCGACGACGACGGAGGAGCTGGAGCTAAGGACGAAGTCGTATCCGTCGGTCCCACAATGGGCTCCATAGTAGGTCCCTCCGCCGCCGGTGGATACTGGGCCATTCCGGCCAGGCCTGACTTTGGGCAGATTTGGAGCTTTGCTACGGGGACGGCAGCGCCGGAATTGATTCACCCTTCAGCGGTGAGTCAGCAGGGTTCTCTATTTGTTCAGCAGCAACAGGCGATTGGAGAGGCTTCGGCGGCACGGGTGGGGAATTACCTTCCGGGACATTTGAATTTACTGGCTTCGTTATCAGGTGGAACCGGCAATTCAGGTCGGAGAGAAGATGACCAACGTTAA | 786 | 56.36 | MSNSEGGNNGIVNGALIDPQRQQTPANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGVGSSSLSTSSTTSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAGAKDEVVSVGPTMGSIVGPSAAGGYWAIPARPDFGQIWSFATGTAAPELIHPSAVSQQGSLFVQQQQAIGEASAARVGNYLPGHLNLLASLSGGTGNSGRREDDQR | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3454189 | 3454974 | + | Bma016732.1 | Bma03g00454 | 79127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00454 | 261 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 1 | 258 | IPR005333 | GO:0003700 | |
Bma03g00454 | 261 | MobiDBLite | consensus disorder prediction | 27 | 46 | - | - | |
Bma03g00454 | 261 | PANTHER | TRANSCRIPTION FACTOR TCP FAMILY-RELATED | 1 | 258 | - | - | |
Bma03g00454 | 261 | MobiDBLite | consensus disorder prediction | 112 | 132 | - | - | |
Bma03g00454 | 261 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bma03g00454 | 261 | ProSiteProfiles | TCP domain profile. | 37 | 91 | IPR017887 | - | |
Bma03g00454 | 261 | Pfam | TCP family transcription factor | 37 | 121 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00454 | Bma-Chr3:3454189 | Bma14g01851 | Bma-Chr14:39881354 | 1.75E-38 | dispersed | |
Bma03g00454 | Bma-Chr3:3454189 | Bma08g00844 | Bma-Chr8:46386758 | 4.72E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56991 | PF03634 | TCP | 2.40E-32 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00454 | K16221 | - | cpap:110813909 | 340.502 |