Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00454 ATGTCTAATTCGGAAGGGGGTAATAACGGCATCGTCAACGGCGCTTTAATTGACCCTCAGAGGCAACAGACGCCGGCGAATGGGGCGCTTGTTGTCAAAAAGCCCCCCTCTAAAGACCGCCACAGTAAGGTCGACGGCCGAGGTCGCCGTATTCGGATGCCGATCATTTGCGCCGCCCGTGTGTTTCAGCTCACTAGAGAGCTTGGACACAAGTCCGATGGTCAGACCATCGAGTGGCTTCTAAGGCAAGCTGAGCCTTCGATCATAGCTGCGACGGGAACTGGTACTACTCCTGCCAGCTTCTCTTCAGTTTCCGTATCCGTCAGAGGCGGCGGCGTCGGTTCGAGTTCGCTCTCTACCTCTTCCACTACGTCCTCTCTATCTCTTTCTCGGCCCCAGGCCTTCTCCGGACCCACCCCCTTTATTCTCGGTAAACGTGTAAGAACCGACGACGACGGAGGAGCTGGAGCTAAGGACGAAGTCGTATCCGTCGGTCCCACAATGGGCTCCATAGTAGGTCCCTCCGCCGCCGGTGGATACTGGGCCATTCCGGCCAGGCCTGACTTTGGGCAGATTTGGAGCTTTGCTACGGGGACGGCAGCGCCGGAATTGATTCACCCTTCAGCGGTGAGTCAGCAGGGTTCTCTATTTGTTCAGCAGCAACAGGCGATTGGAGAGGCTTCGGCGGCACGGGTGGGGAATTACCTTCCGGGACATTTGAATTTACTGGCTTCGTTATCAGGTGGAACCGGCAATTCAGGTCGGAGAGAAGATGACCAACGTTAA 786 56.36 MSNSEGGNNGIVNGALIDPQRQQTPANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGVGSSSLSTSSTTSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAGAKDEVVSVGPTMGSIVGPSAAGGYWAIPARPDFGQIWSFATGTAAPELIHPSAVSQQGSLFVQQQQAIGEASAARVGNYLPGHLNLLASLSGGTGNSGRREDDQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3454189 3454974 + Bma016732.1 Bma03g00454 79127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00454 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bma03g00454 261 MobiDBLite consensus disorder prediction 27 46 - -
Bma03g00454 261 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
Bma03g00454 261 MobiDBLite consensus disorder prediction 112 132 - -
Bma03g00454 261 MobiDBLite consensus disorder prediction 1 22 - -
Bma03g00454 261 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Bma03g00454 261 Pfam TCP family transcription factor 37 121 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00454 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - cpap:110813909 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00454 Bma-Chr3:3454189 Bma14g01851 Bma-Chr14:39881354 1.75E-38 dispersed
Bma03g00454 Bma-Chr3:3454189 Bma08g00844 Bma-Chr8:46386758 4.72E-141 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56991 PF03634 TCP 2.40E-32 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00454 Bma_Chr03 FPKM 59.117313 66.761185 79.278793 79.891273 43.986042 42.964672 41.934776 80.362144 77.637215 85.436958