Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00454 ATGTCTAATTCGGAAGGGGGTAATAACGGCATCGTCAACGGCGCTTTAATTGACCCTCAGAGGCAACAGACGCCGGCGAATGGGGCGCTTGTTGTCAAAAAGCCCCCCTCTAAAGACCGCCACAGTAAGGTCGACGGCCGAGGTCGCCGTATTCGGATGCCGATCATTTGCGCCGCCCGTGTGTTTCAGCTCACTAGAGAGCTTGGACACAAGTCCGATGGTCAGACCATCGAGTGGCTTCTAAGGCAAGCTGAGCCTTCGATCATAGCTGCGACGGGAACTGGTACTACTCCTGCCAGCTTCTCTTCAGTTTCCGTATCCGTCAGAGGCGGCGGCGTCGGTTCGAGTTCGCTCTCTACCTCTTCCACTACGTCCTCTCTATCTCTTTCTCGGCCCCAGGCCTTCTCCGGACCCACCCCCTTTATTCTCGGTAAACGTGTAAGAACCGACGACGACGGAGGAGCTGGAGCTAAGGACGAAGTCGTATCCGTCGGTCCCACAATGGGCTCCATAGTAGGTCCCTCCGCCGCCGGTGGATACTGGGCCATTCCGGCCAGGCCTGACTTTGGGCAGATTTGGAGCTTTGCTACGGGGACGGCAGCGCCGGAATTGATTCACCCTTCAGCGGTGAGTCAGCAGGGTTCTCTATTTGTTCAGCAGCAACAGGCGATTGGAGAGGCTTCGGCGGCACGGGTGGGGAATTACCTTCCGGGACATTTGAATTTACTGGCTTCGTTATCAGGTGGAACCGGCAATTCAGGTCGGAGAGAAGATGACCAACGTTAA 786 56.36 MSNSEGGNNGIVNGALIDPQRQQTPANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGVGSSSLSTSSTTSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAGAKDEVVSVGPTMGSIVGPSAAGGYWAIPARPDFGQIWSFATGTAAPELIHPSAVSQQGSLFVQQQQAIGEASAARVGNYLPGHLNLLASLSGGTGNSGRREDDQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3454189 3454974 + Bma016732.1 Bma03g00454 79127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00454 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bma03g00454 261 MobiDBLite consensus disorder prediction 27 46 - -
Bma03g00454 261 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
Bma03g00454 261 MobiDBLite consensus disorder prediction 112 132 - -
Bma03g00454 261 MobiDBLite consensus disorder prediction 1 22 - -
Bma03g00454 261 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Bma03g00454 261 Pfam TCP family transcription factor 37 121 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00454 Bma-Chr3:3454189 Bma14g01851 Bma-Chr14:39881354 1.75E-38 dispersed
Bma03g00454 Bma-Chr3:3454189 Bma08g00844 Bma-Chr8:46386758 4.72E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56991 PF03634 TCP 2.40E-32 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00454 K16221 - cpap:110813909 340.502