Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00483 ATGCTCACAAGAACATGTGGATTTGGAAATAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAAGGTGGAATTCCAGATTGGAAAGAGGTTCCACAGATAGCCACAGATGAATCTCTTCCTGAAAGACCTGGAGAGCCAGATTGTCCTTACTTTTTGAAGACTCAAAGATGCAAATTTGGTTTAAGATGCAAGTTTAATCATCCAAAAGATCAATTAGCTTCTACAGATGCTTCAGAGAATACTGACATCTCTGCATTGCCCGAGAGACCATCAGAACCTCTCTGTGCATTTTATATGAAGACTGGAAAATGTAAGTTTGGTGTAATCTGCAAATTCCATCATCCAAAAGAATTACTAGTGCAATCAGCCGAACAAGAGAATTGTAATGGTGGGCAGGCTGAATCATCAGGAGTTAAGGTAGAAGGAGCAAGTGGAGATCTAAAGCTTTTCAAGTCTCCTGTTCCATTTACAGCAGCATTGTCCTATAACTCCAAAGGACTTCCAATAAGACCGGAAGAAGTTGATTGTCCGTTCTATGTAAAAACTGGCAGTTGCAAGTATGGTGTAACTTGCCGATACAATCACCCTGACAGAAACGCAATATTTCAGCCTTCAGCATCACTTGTTCATCCTTTTGTCGCTCCAGCATCGGCTAATTTGAATACTGGAGCTGTTAACTATTATATGAAGACTGGGGTGTGTAAGTTTGGGGAGAGATGCAAATTTCATCACCCTGTTGATCGTTCAACTCCAAATGCAAAGAATGTTGCCCAGCAAAATGTCAAACTGACTCTTGCTGGATTACCCAGGAGGGAGTTCTTTGTGTTGAGAGATTATGCAAGAGAAATTCTTGGGTTGAGATGGAGGTCTTGGATGACGAAGTATTACATGGAACGCTATCTTAAAAATCAGACATTTTACAAAATCCAGTCCAAATCAATCATTGATAATCCAGATCAGCGTATTGTTGATGATCTAAGTTCTTTCACTGGGACAGCCCTATCATTCTCACTGACGCTTTTCAATGCTGCAATTGACTTAATATCTTTTAGTAATATCTTATATGGTATCTATCCACCCCTCTTCGTCGTCCTTCTTTTATATTCAATTGGTGGAACAGCTATTAGTTTTTTCATTGGAAGGGGATTGGTTACTCTTAATTTCTTGCAAGAGAAAAAAGAAGCAGATTTTCGTTATGGACTTGTTCGTGTTCGAGAAAATGCTGAATCAATTGCCTTCTATGGTGGAGAAGAGAATGAGATGCAACTTTTGTTGCTTCGCTTCCGCAGTGCTTTTGAAAATTTAACAAAATTACTACTAGCATCCAGAAATCTTGATTTCTTCACCAGTGGATACCGCTATCTTATTCAAATTCTTCCTGCAGCTGTTGTTGCCCCAATGTTTTTCTCAGGGAAAATTGAATTTGGGGTTATCAATCAATCAGTATCTGCTTTTAACCATATCCTTGGAGATTTTTCAATTATTGTATATCAGTTTCAGGCTATCAGTGCATTTTCGGCTGTAATTGATCGACTAGGTGAATTTGATGACATTTTGGATGGCTGTAGTTCCAAAATTTTGTCCGATAGTTTGGAACAGATACGGCTTCAATACTGTAATGTGAAAAGTTTGGCTTTATCAAATGGATATGTGGCCTCAGATAAGTGTCAGAAATTAGTAGATATAGAAAATTTGACGCTACACACACCAACTAGCGGAGCTACCCTGGTTAGAGACTTAACATTCGCTATAAAGGAAAAAGAGCATTTGCTGGTTGCTGGTCCTAGTGGAAGTGGAAAAACTTCGTTGTTAAGAGCCATGGCTGGTCTTTGGAACACTGGAAGTGGAAAGATCACATTTTATGTCAATGATGACGTTGGAAAAATCACATTTTATGTCAATGATGACGTGTGTTTGCCAAATCCCATTTCTCCAGATGAAACTCCTCCTGAACTAACACCAGATTCTGAAAGGTCAATCAATAGAAATACTCTAGGGATATTTTTTCTTCCTCAGCGACCTTATATGGTGCTGGGTACTCTGCGCGAGCAGTTACTTTACCCTACATGGACTGGAGCTGCAACTCCTGCCTTAGACGCTAGCAAATCAACGAGTTTGCCTTCCTTCTTGTCTTGTTTACCAAATTCAGAAAGTGGTACCGAAAAGCCTGGAAAACCAACGACAGATGATCTAAACCAGGTTTTAGAGGATGTTCGCTTGGGATATTTATTGACTCGATTTAGTAATCTGGACGTAACATGTGAATGGTCCAGTGTTCTTTCCCTTGGTGAGCAGCAACGCCTGGCGTTTGCACGACTTCTGCTTTCAAAACCAAAACTGGTTTTGTTGGATGAGTCTACCAGTGCTCTAGACGAAGCAAACGAGAGTCATCTATATCGGGAGATAGAAGCGGCGGGCATAACCTATGTTAGCATTGGCCATCGGCGAACTTTGTATAATCACCATAAAAAAGTTCTGCACATATCCACCCCTAGTGGCTCTGAAGGGAATTGGTGTATCGAACCCATTAGCCGTGACACCCCTTATAGTTCATCAAATCGCAAATGA 2571 40.37 MLTRTCGFGNSCKFDHPIWVPEGGIPDWKEVPQIATDESLPERPGEPDCPYFLKTQRCKFGLRCKFNHPKDQLASTDASENTDISALPERPSEPLCAFYMKTGKCKFGVICKFHHPKELLVQSAEQENCNGGQAESSGVKVEGASGDLKLFKSPVPFTAALSYNSKGLPIRPEEVDCPFYVKTGSCKYGVTCRYNHPDRNAIFQPSASLVHPFVAPASANLNTGAVNYYMKTGVCKFGERCKFHHPVDRSTPNAKNVAQQNVKLTLAGLPRREFFVLRDYAREILGLRWRSWMTKYYMERYLKNQTFYKIQSKSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAIDLISFSNILYGIYPPLFVVLLLYSIGGTAISFFIGRGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYGGEENEMQLLLLRFRSAFENLTKLLLASRNLDFFTSGYRYLIQILPAAVVAPMFFSGKIEFGVINQSVSAFNHILGDFSIIVYQFQAISAFSAVIDRLGEFDDILDGCSSKILSDSLEQIRLQYCNVKSLALSNGYVASDKCQKLVDIENLTLHTPTSGATLVRDLTFAIKEKEHLLVAGPSGSGKTSLLRAMAGLWNTGSGKITFYVNDDVGKITFYVNDDVCLPNPISPDETPPELTPDSERSINRNTLGIFFLPQRPYMVLGTLREQLLYPTWTGAATPALDASKSTSLPSFLSCLPNSESGTEKPGKPTTDDLNQVLEDVRLGYLLTRFSNLDVTCEWSSVLSLGEQQRLAFARLLLSKPKLVLLDESTSALDEANESHLYREIEAAGITYVSIGHRRTLYNHHKKVLHISTPSGSEGNWCIEPISRDTPYSSSNRK 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3752240 3770301 - Bma016767.1 Bma03g00483 79156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00483 856 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 274 505 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma03g00483 856 SMART AAA_5 587 833 IPR003593 -
Bma03g00483 856 ProSiteProfiles Zinc finger C3H1-type profile. 171 199 IPR000571 GO:0046872
Bma03g00483 856 Gene3D - 536 836 IPR027417 -
Bma03g00483 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 829 IPR027417 -
Bma03g00483 856 SUPERFAMILY CCCH zinc finger 173 198 IPR036855 GO:0046872
Bma03g00483 856 Pfam ABC transporter transmembrane region 2 256 470 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma03g00483 856 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Bma03g00483 856 SMART c3hfinal6 171 198 IPR000571 GO:0046872
Bma03g00483 856 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Bma03g00483 856 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Bma03g00483 856 SMART c3hfinal6 222 247 IPR000571 GO:0046872
Bma03g00483 856 SUPERFAMILY CCCH zinc finger 227 249 IPR036855 GO:0046872
Bma03g00483 856 Gene3D - 1 73 - -
Bma03g00483 856 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Bma03g00483 856 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Bma03g00483 856 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 255 845 - -
Bma03g00483 856 SUPERFAMILY CCCH zinc finger 48 73 IPR036855 GO:0046872
Bma03g00483 856 Gene3D ABC transporter type 1, transmembrane domain 274 518 IPR036640 GO:0005524|GO:0016021
Bma03g00483 856 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Bma03g00483 856 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
Bma03g00483 856 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 255 845 - -
Bma03g00483 856 Gene3D - 74 127 - -
Bma03g00483 856 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 561 856 IPR003439 GO:0005524
Bma03g00483 856 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 246 IPR000571 GO:0046872
Bma03g00483 856 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 197 IPR000571 GO:0046872
Bma03g00483 856 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Bma03g00483 856 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Bma03g00483 856 Pfam ABC transporter 579 789 IPR003439 GO:0005524
Bma03g00483 856 CDD ABCD_peroxisomal_ALDP 563 839 - -
Bma03g00483 856 SUPERFAMILY ABC transporter transmembrane region 272 516 IPR036640 GO:0005524|GO:0016021
Bma03g00483 856 Gene3D - 170 260 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00483 Bma08g00829 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00483 Bma-Chr3:3752240 Bma06g01512 Bma-Chr6:51579673 4.90E-15 dispersed
Bma03g00483 Bma-Chr3:3752240 Bma13g00044 Bma-Chr13:499466 1.96E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56993 PF06472 ABC_membrane_2 1.20E-46 CL0241 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00483 - - pop:7464579 843.958