Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00485 ATGATGAATAAAGGGGTAGGAGGCGGCGGAGGTGGAAGTGGAAGTGGACCGACGGCTGCGGCTGCGACGGCAGCTTCGCAGAAGCAAAAGGCGTTGTTGCATCGAGTGGAAACCGATATAGCCAATATCGTCGACAATTTTACCCACCTCGTGAATGATCCACCGGTCAGAAATTCTCAGGAAGCTTTCATGATGGAAATGCGTGCAGCTAGAATGGTTCAGGCAGCTGACTCACTCCTCAAGTTGGTGTCGGAACTTAAGCAGACAGCAATTTTCTCCGGATTTGCTTCGCTGAACGACCATGTAGAGCAAAGGACAGCCGAGTTTGATCAACAAGCAGAGAAGAGTGACCGCATGTTGGCTACAATTGGCGAAGAGGCTGCCAAGGGGATCAAGGAGCTTGAATCTCATTACTATTCTTCTGCACAGAGAAGGGAGAATTTCCTAGTTTAG 453 49.67 MMNKGVGGGGGGSGSGPTAAAATAASQKQKALLHRVETDIANIVDNFTHLVNDPPVRNSQEAFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTAEFDQQAEKSDRMLATIGEEAAKGIKELESHYYSSAQRRENFLV 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3776058 3777228 - Bma016769.1 Bma03g00485 79158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00485 150 Pfam Surfeit locus protein 5 subunit 22 of Mediator complex 35 128 IPR009332 GO:0003712|GO:0006357|GO:0016592
Bma03g00485 150 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22 2 145 IPR009332 GO:0003712|GO:0006357|GO:0016592
Bma03g00485 150 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00485 K15139 MED22; mediator of RNA polymerase II transcription subunit 22 - jre:109006332 203.371
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1188 Blo04g00452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00930 . Bma03g00485 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007585 1 4 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 2 1 1 1 1 2 0 1 1 1 3 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00485 Bma_Chr03 FPKM 37.22295 43.691891 61.272041 62.231339 25.815805 28.566528 20.969606 80.654457 80.733841 77.386284