Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00486 ATGAGCGCGGGAGATCTGCCAAAAAGGGGGGCGAACGTCCTCAAAGGTCACGAAAATGTTGTTTTGGCTGCTAGGTTTAATGGCGATGACAATTATTGTCTTACCTACGGTAAGGATCGAACCATCTGTCTCTGGATTCCTCACCGCGGCATCCATATTAAAACCTACAAATGTCATGGCCGTGAAGTTCGCGACGTCCACGTCACCGCCTTCTCTCTCTCTCTCTCTCTCTCGGACAACTCAAAGTTGTGTTCTTGCAGTGGTGATCGACAAATCTTTTATTGGGATGTATCAACAGGACGTGTTATACGAAAATTTTGTGGGCATGATGGCGAGATCATTGAGGCATTTTTAGACACTGTAATGTCTGTTTGTTTAACGAAAATGGAAATTGTTAGCTTCTCTGAATCTGCTGCTAAAAGGGAGGCTCGTTTAGGTGAGATTGAATCAGAATTGGTGCGTTCTCAAGCTACTTGTGCTCGTCTTGTGCAGGAGAAAGAACTCATAGAGAGGCATAATGTTTGGCTTAATGACGAGTTAACAACTAAAGTTGATAGTCTCATTGAGCTGAGAAGATCTCATTCTGATTTTGAAGCAGACATGTGTTCCAAGGTTTCAAATGTCCAGAGACAATTAGATGAATGCTCTAGCTCATTACAGTGGAATAAGGACAGAGTTAGGGAGCTAGAAATTAAGTTAACATCCTTGCAAGAGGAATTATGCACATCTAAAGATACTGCGGCAGTCAATGAGGAGCGGCTTTCCGCTGAACTCTCAACAGTAAATAAACTTGTTGAGCTTTATAAAGAAAGTTCTGATGAATGGTCCAGAAAGTCAGGTGGGCTAGAGGGGGTTGTAAAAGCCTTGGAGACACATTTGACTCAAGTTGAAAGTGATTGCAAAGAGAAGCTTGAAAAGGAAGAATCTCTAAGAAAGCAATTTGAAAGGGAGGCTGCAAATTTGAAAATGAAACTTGAGGAGTGTGAAGCAGAAATGGAATCTAGTCGGAAAGAAAATGAGCTGAATCTTCTTCCACTCAGCCGCTTTACTTCAGACAGATGGATAAGTTCTCTTGAAACTGATGATGCAGTCAATGACAATCAGATGCTTATCCCCAAGATACCATTGGGTATTTCTGGAACAGCCTTTGCAGCTTCGCTTTTGCGCGATGGATGGAGTCTGGCTAAAATGTATGCCAAATATCAAGAGACTGCTGATTCCCTGCGACATGAGCAGTTAGGCAGAAAGGAAACTGAAGCTGTTTTGCAAAGGGTCTTGTATGAATTAGAGGAGAAAGCAGAAGTCATTTTGGATGAAAGAGCTGAACATGAGCGAATGGCTGAGGCATACTCCATGATAAATAAAAAATTGCAGAATTCTATATCTGAACAGGAAAGTTTGGAAAAAGCCATTCAAGAACTGAAGGCTGACTTGAGGAGGCACGAACGTGATTATTCCCTTGTTCAAAAAGAGAATATGGATCTCCAGAAGCAGGTAACTGTCCTTTTGAAGGAGTGTCGTGATATTCAACTTCGGTGCGGATCTCGTATTTCTGAAAGTTTTGATAACGGGTCAAATATTGCTTCCTTTGAGATGAATGTAGATACTGATGCTGAAAAAGTTATATCAGAACGCCTTTTGACCTTTAAGGACATAAATGGATTGGTTGAGCAGAATGTTGAGCTGAGAAGCCTTGTTCGCAATCTTTCTAACCAGCTTGATAATAGAGAACTAGAGTTTAAGGAGAAGTTGGAAGTGGAGATCAAGATTCGTACTGATGAAGCGGCATCAAAAGTTGCTGCTGTTTTGCAGAGAGCTGAAGAGCAAGGGCAGATGATTGATTCCCTTCACTCTTCTGTTTCTATGTACAAAAGGCTCTATGAAGATGAGCAAACTCGAAATCTGACTCGGCCCAAACCTGCTGGAACTTCTCCAGAGGTTGGAAGAACAGACCTCAAGTTACTACTGGATAGTTCTCAGGAGGCTAGTAGAGTTGCCAAAGAGCAAGCTGCAGAACGTGTGAGATGTCTGGAAGAAGATCTGGCAAAGTCTAGGAGTGAAATTATTTTATTACGATCCGAACGTGACAAATTAAATCTCGAGGCCAGTTTCGCTAGAGGAAAGCTTGATAGTTTTGTAAAAGAATTTGAGCATCAGAGAGTTGAAATGAGCGGCATATTAGCTAGGAACGTGGAGTTTTCACATTTACTAATTGACTATCAAAAAAAAGTGCGTGAAAGGTCTGAATCCTTGCATGCTGCTGAGGAGATTTCTCGGAAGTTGAGTATGGAGGTATCTATTTTAAAGCATGAAAAGGAAATGATGTCAAGTGCTGAAAAGAAAGCCAATGATGAAATACGTTCACTTTCAGAGAGAGTATTCCGTCTACAGGCTAGTTTGGACACTATTCATACGGTTGAAGACATTCGCGAGGAGGCAAGAGCTTCAGAAAGAAAAAAGCAAGAGGACTATGTTAAACATCTTGAGATTGAATGGGCTGATGCTAAGAAAGAGCTGCTAGATGAACGAGAAAATGTTCGTGCTCTTACACTCGAGCGTGAGAAAATAATAAAGAATGCCATGGCCCAAGTTGAAAATATGGGTAAAGAACTAGCTAATGCTTTGCATGCTGTTGCAGCTGCTGAGGCACGAGCTGCAGTTGCAGAGGTGGATGTTTCGTTTCTTTTGTATTTCTTTAAAAAAAATCAGTGCATTGCTTTAAACACACCTTTATATTTACTCAGAAACTTAAATAGCAATGGTATGGAATTGCGTATTGCTAAAGAAAACATTGAAAAATTTAAAGAAGAAGCACGAGCTAATAAGGATCATATGATTCAGTATAAAAACATTGCTCAAGTAAATGAAGATGCCTTGAAACAGTTAGAATTCGCTCATGAGAACTTCAAGATTGAGGCTGACAAGCTCAGAACATCACTGGAAGCTGACCTCCTTTCACTTAGATCAAGGGTTTCGGATCTTGAAAATGAATTAATTTTGAAATCAAAAGAAATGGCTTCTACTGCGGCTGGGAAAGAGGAGGCCCTTGCTTCTTCTTTGACTGAAATTACCAGTCTGAAAGAAGAAATTGCAGCAAAAATTTCTCAAATCATCACATTTGAAATTCAGACTTCTGCTTTGAGAGAAGAGTTAGAAAGAGAGCATCAGAAATGGCGTGATGCTCAAACCAATTACGAAAGACAGGTTATTCTCCAGTCTGAGACAATTCAGGAATTGACAAGAACCTCACAAGCGTTGGCCAAACTTCAAGAGGAAACAGCGGAACTTCGGAGATCAGCAGATGTCCTCGAAAGTGAAAATAAAGAACTAAAGGCCAAATGGCTCACAGAGAAGGTCGTTCTAGAGGAATCGAGGAAGGAAGCTGAGAAAAAATATAATGATCTAAATGAACAGAACAAAATTTTGCACGGCCGGCTGGAGGCTTTGCACATACAATTTGCTGAGAAAGATCGCAATTCTGCTGGAATGTCCTATGGAAGCACTACTTCAGATCAGTCCGGGGAAGCTGGTTTACAAAATGTGATTAGTTATCTCAGAAGAACAAAAGAGATTGCAGAAACAGAGATCACTTTGTTAAAACAGGAAAAATTGCGATTGCAATCACAACTTGAAAGTGCTCTCAAAGCTATGGAAACTGCACAAACATCACTTCATGCTGAGCGTGCTACTTCAAGTGCCCGAGTGTTCACAGAGGAGGAAATCAAATCCTTACAACTTCAGATCGGAGAGATGAATTTACTTCGTGAAAGCAATATGCAACTTCGAGAAGAAAACAAGCATAATTTTGAGGAATGCCAGAAATTGCAAGAAGTTACGCAAAAAGGTAGAGTGGAGGTTGAGAACCTTCAGACATTAGTGAAAGAAAAACAGGTGGAGATGGAATCCTTGAAGAAGATGGTTGAAACACTGAAGACGGATAGATATCACCTCGAAAACAGAGTGTCAGAGTTACTTGATCGGACAAATCATGTGGACGTGGAGGACTATAATCAATTAAAAAATGTTGTTCAACTAATGAAGGATAAATTGAACGAAAAGGAAGTTCAATCTGAAGAACTTCATAAGCGTGTATCGGAGATGCAGGGAGCAATATCCCAATTAGAGGAAGACCTTTCGAAGTGTAGAGTTGAGCTAAATGAGAGGGAAAGAAGGTTGAATGATATTATAAAAATTGAGGCTACTTTAAAGCTAGACGTGGAGAAGCAGAAAAAGGCTTTAGCGCAGTATAAGAGGAAGTTTGAAGTCATTTCCAAGGAAAAGGAGGGACTGGTCGTGGAGAACCAAGCTCTTTCTAAGCAGATGGAGGATATCAAACAAGGTAGGAAAAAGCCTGGCGCGGATACTGCAGGTGAACAGGCCATAGAGGAGAAGGACACAAGAATTCAGATTCTGGAAAAGCATATGGAGAGGCTAAGGGAGGAACTAAAAAAGGAGAAGGGAGACAGTCAAGCAGAGAAAAACTTGCGATTGAATATTGAGAAGGCAATAGATCAAACAAAGCTCATAAATGAACTAGAAAAGCACAAACGAGCCTTGAAGCAACTCTTTGACGAATTTGAAAAACTAAAGCTTTCAAAATCCAATCTTCCAGAGGATGCAACATTGGTTCAGCTTCTCTCAGGGACTGCCTTGGACGATCCTGCTTTATCCTATCTTTCAACGCTTGAAAGTCTTGAAAAGGCTGCACAGTCAATCCTTTCTAGTGAACTTGAAGACCGTCAAGCTTCTCCAGAGACTTCGATGATTGCTGACAGTACAACAGTTCCCACTCAGAATCCTGGATTTGCACCTTCTGTGGATTCTGGGATAACACATATACCTGGAAAAGCAACAGAAGAAATTGAGAAGAGACCTTCGCTCAAGACAAATATTGAAACCCGAAAAATAGCAAGGAAGTTGCTTCGGCCCCAGCTGGCTAAACCTGATGAGCCACAGGCAGATGTAGAAATGGCTGAAATGGAACCACCAAACATAAGTGGAAAGTCCACCTCGCAGGTTCCTAGACTGATGCGCAAACGGTTAGCTTCTTCCAGTTCGGAAGTACATGAACATGTAGCCCTTCAAGGACTCCCTAGCACTGAAGTTACACCTATGTTGAAGAAATCTAAAGGTTCAGATTCCACACTTGAGGGTGCTGAAGGTCAATCAGTTGTCCCTTTGGAAAGCCTTGGAACTCAGCCAGCTTCTGAAGAAGTTTCTGATATTTATGAGATTCCTCAGGGTTTAAGTGAGGAAGCTCTTGATGCTGAGCGAGATGTGGTTGAAACGGCTAGGGAGAAGGTTGATGTACCAAAAGAAGAAGAATCAGATAAAACAAATCAACTTGAGTATCAAACTTCAAGGAAGAATGATGAAGAGAATTTGGGTAGTGCAGCTGGAGCAGAGGTGGAAACAGATGACACGATTAAAGATCAGGCTGAGATGGAAAGTGGTCAACTAGTGGTCGAAAGTGGAAGCGAAAGAGAAGAGGGAGAGTTGTTGCCGGACACAGTCGACCACGAGATTAGTGGACATTTGATGGAGATTACTGAAGGAGGGGATGCCCCATCTGAGAGAGTTGCTACACCTTTGATTCCATCGGTTAAGGCTGATAATGAATCTCTAGCTGCCACAGCACTGGAAGCTGGTGAGATAAATTCTCCTGAATCCCCTAATGAAGACAAGAATGATGACGTTGATATAACTGAGGAAATCACTGGAGATGTAGACAACTTCGGTGAGGGGACAGCTGGAGGATTAGAGAAGTCTGACGATGCAAACGACGAGGTTGCCGGAGAGGTAGCTCAGGCCGAAAGGAATTCAGGTGACAAAATTTTATCTACCACTGTTGTAGAAGCTAATTTTTCCAGAAGAGCCAGTCCTAGTGTCACCGGAGAAGCTAGGGAGGTGAGGCGGATCTCTCCTCCGGGCAGTACTCCTTCAACTACTATAAACTTGCAAGAAAGAGCAAAGGAGAGGGCTTTGCTTAGGCAGGCTGCGGTGATGACCCCTTCACCCAGTCGAGGACGAGGAAGAACAACAGTCCGTGGTAGGGTTGCTCGAGGCGGACGTACTGCTCGAGGCGGCCGTAGTCAACCGGGTGAACATAATTAA 6114 42.13 MSAGDLPKRGANVLKGHENVVLAARFNGDDNYCLTYGKDRTICLWIPHRGIHIKTYKCHGREVRDVHVTAFSLSLSLSDNSKLCSCSGDRQIFYWDVSTGRVIRKFCGHDGEIIEAFLDTVMSVCLTKMEIVSFSESAAKREARLGEIESELVRSQATCARLVQEKELIERHNVWLNDELTTKVDSLIELRRSHSDFEADMCSKVSNVQRQLDECSSSLQWNKDRVRELEIKLTSLQEELCTSKDTAAVNEERLSAELSTVNKLVELYKESSDEWSRKSGGLEGVVKALETHLTQVESDCKEKLEKEESLRKQFEREAANLKMKLEECEAEMESSRKENELNLLPLSRFTSDRWISSLETDDAVNDNQMLIPKIPLGISGTAFAASLLRDGWSLAKMYAKYQETADSLRHEQLGRKETEAVLQRVLYELEEKAEVILDERAEHERMAEAYSMINKKLQNSISEQESLEKAIQELKADLRRHERDYSLVQKENMDLQKQVTVLLKECRDIQLRCGSRISESFDNGSNIASFEMNVDTDAEKVISERLLTFKDINGLVEQNVELRSLVRNLSNQLDNRELEFKEKLEVEIKIRTDEAASKVAAVLQRAEEQGQMIDSLHSSVSMYKRLYEDEQTRNLTRPKPAGTSPEVGRTDLKLLLDSSQEASRVAKEQAAERVRCLEEDLAKSRSEIILLRSERDKLNLEASFARGKLDSFVKEFEHQRVEMSGILARNVEFSHLLIDYQKKVRERSESLHAAEEISRKLSMEVSILKHEKEMMSSAEKKANDEIRSLSERVFRLQASLDTIHTVEDIREEARASERKKQEDYVKHLEIEWADAKKELLDERENVRALTLEREKIIKNAMAQVENMGKELANALHAVAAAEARAAVAEVDVSFLLYFFKKNQCIALNTPLYLLRNLNSNGMELRIAKENIEKFKEEARANKDHMIQYKNIAQVNEDALKQLEFAHENFKIEADKLRTSLEADLLSLRSRVSDLENELILKSKEMASTAAGKEEALASSLTEITSLKEEIAAKISQIITFEIQTSALREELEREHQKWRDAQTNYERQVILQSETIQELTRTSQALAKLQEETAELRRSADVLESENKELKAKWLTEKVVLEESRKEAEKKYNDLNEQNKILHGRLEALHIQFAEKDRNSAGMSYGSTTSDQSGEAGLQNVISYLRRTKEIAETEITLLKQEKLRLQSQLESALKAMETAQTSLHAERATSSARVFTEEEIKSLQLQIGEMNLLRESNMQLREENKHNFEECQKLQEVTQKGRVEVENLQTLVKEKQVEMESLKKMVETLKTDRYHLENRVSELLDRTNHVDVEDYNQLKNVVQLMKDKLNEKEVQSEELHKRVSEMQGAISQLEEDLSKCRVELNERERRLNDIIKIEATLKLDVEKQKKALAQYKRKFEVISKEKEGLVVENQALSKQMEDIKQGRKKPGADTAGEQAIEEKDTRIQILEKHMERLREELKKEKGDSQAEKNLRLNIEKAIDQTKLINELEKHKRALKQLFDEFEKLKLSKSNLPEDATLVQLLSGTALDDPALSYLSTLESLEKAAQSILSSELEDRQASPETSMIADSTTVPTQNPGFAPSVDSGITHIPGKATEEIEKRPSLKTNIETRKIARKLLRPQLAKPDEPQADVEMAEMEPPNISGKSTSQVPRLMRKRLASSSSEVHEHVALQGLPSTEVTPMLKKSKGSDSTLEGAEGQSVVPLESLGTQPASEEVSDIYEIPQGLSEEALDAERDVVETAREKVDVPKEEESDKTNQLEYQTSRKNDEENLGSAAGAEVETDDTIKDQAEMESGQLVVESGSEREEGELLPDTVDHEISGHLMEITEGGDAPSERVATPLIPSVKADNESLAATALEAGEINSPESPNEDKNDDVDITEEITGDVDNFGEGTAGGLEKSDDANDEVAGEVAQAERNSGDKILSTTVVEANFSRRASPSVTGEAREVRRISPPGSTPSTTINLQERAKERALLRQAAVMTPSPSRGRGRTTVRGRVARGGRTARGGRSQPGEHN 2037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3777895 3817923 - Bma016770.1 Bma03g00486 79159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00486 2037 PANTHER NUCLEOPROTEIN TPR-RELATED 130 2027 - -
Bma03g00486 2037 Coils Coil 457 498 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1591 1611 - -
Bma03g00486 2037 Coils Coil 1286 1320 - -
Bma03g00486 2037 SUPERFAMILY WD40 repeat-like 12 114 IPR036322 GO:0005515
Bma03g00486 2037 Coils Coil 426 446 - -
Bma03g00486 2037 Coils Coil 552 579 - -
Bma03g00486 2037 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 45 IPR001680 GO:0005515
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1957 1985 - -
Bma03g00486 2037 Gene3D - 4 133 IPR015943 GO:0005515
Bma03g00486 2037 Coils Coil 1399 1426 - -
Bma03g00486 2037 Coils Coil 1189 1216 - -
Bma03g00486 2037 PANTHER NUCLEOPROTEIN TPR 130 2027 - -
Bma03g00486 2037 Coils Coil 286 338 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1591 1605 - -
Bma03g00486 2037 Coils Coil 1336 1391 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 2002 2037 - -
Bma03g00486 2037 Coils Coil 1048 1068 - -
Bma03g00486 2037 Coils Coil 667 701 - -
Bma03g00486 2037 Coils Coil 857 884 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1875 1943 - -
Bma03g00486 2037 Coils Coil 219 239 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1765 1790 - -
Bma03g00486 2037 Coils Coil 1072 1145 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1681 1738 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1765 1810 - -
Bma03g00486 2037 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 45 - -
Bma03g00486 2037 Coils Coil 924 944 - -
Bma03g00486 2037 Coils Coil 1461 1495 - -
Bma03g00486 2037 Pfam TPR/MLP1/MLP2-like protein 1022 1149 IPR012929 GO:0006606
Bma03g00486 2037 Coils Coil 977 997 - -
Bma03g00486 2037 Coils Coil 1920 1940 - -
Bma03g00486 2037 SMART WD40_4 49 96 IPR001680 GO:0005515
Bma03g00486 2037 SMART WD40_4 7 46 IPR001680 GO:0005515
Bma03g00486 2037 Coils Coil 1505 1532 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1705 1719 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00486 Bma-Chr3:3777895 Bma13g00214 Bma-Chr13:3102812 1.27E-58 dispersed
Bma03g00486 Bma-Chr3:3777895 Bma15g00188 Bma-Chr15:1940254 3.66E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00486 K09291 - jre:108979354 2055.8