Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00486 ATGAGCGCGGGAGATCTGCCAAAAAGGGGGGCGAACGTCCTCAAAGGTCACGAAAATGTTGTTTTGGCTGCTAGGTTTAATGGCGATGACAATTATTGTCTTACCTACGGTAAGGATCGAACCATCTGTCTCTGGATTCCTCACCGCGGCATCCATATTAAAACCTACAAATGTCATGGCCGTGAAGTTCGCGACGTCCACGTCACCGCCTTCTCTCTCTCTCTCTCTCTCTCGGACAACTCAAAGTTGTGTTCTTGCAGTGGTGATCGACAAATCTTTTATTGGGATGTATCAACAGGACGTGTTATACGAAAATTTTGTGGGCATGATGGCGAGATCATTGAGGCATTTTTAGACACTGTAATGTCTGTTTGTTTAACGAAAATGGAAATTGTTAGCTTCTCTGAATCTGCTGCTAAAAGGGAGGCTCGTTTAGGTGAGATTGAATCAGAATTGGTGCGTTCTCAAGCTACTTGTGCTCGTCTTGTGCAGGAGAAAGAACTCATAGAGAGGCATAATGTTTGGCTTAATGACGAGTTAACAACTAAAGTTGATAGTCTCATTGAGCTGAGAAGATCTCATTCTGATTTTGAAGCAGACATGTGTTCCAAGGTTTCAAATGTCCAGAGACAATTAGATGAATGCTCTAGCTCATTACAGTGGAATAAGGACAGAGTTAGGGAGCTAGAAATTAAGTTAACATCCTTGCAAGAGGAATTATGCACATCTAAAGATACTGCGGCAGTCAATGAGGAGCGGCTTTCCGCTGAACTCTCAACAGTAAATAAACTTGTTGAGCTTTATAAAGAAAGTTCTGATGAATGGTCCAGAAAGTCAGGTGGGCTAGAGGGGGTTGTAAAAGCCTTGGAGACACATTTGACTCAAGTTGAAAGTGATTGCAAAGAGAAGCTTGAAAAGGAAGAATCTCTAAGAAAGCAATTTGAAAGGGAGGCTGCAAATTTGAAAATGAAACTTGAGGAGTGTGAAGCAGAAATGGAATCTAGTCGGAAAGAAAATGAGCTGAATCTTCTTCCACTCAGCCGCTTTACTTCAGACAGATGGATAAGTTCTCTTGAAACTGATGATGCAGTCAATGACAATCAGATGCTTATCCCCAAGATACCATTGGGTATTTCTGGAACAGCCTTTGCAGCTTCGCTTTTGCGCGATGGATGGAGTCTGGCTAAAATGTATGCCAAATATCAAGAGACTGCTGATTCCCTGCGACATGAGCAGTTAGGCAGAAAGGAAACTGAAGCTGTTTTGCAAAGGGTCTTGTATGAATTAGAGGAGAAAGCAGAAGTCATTTTGGATGAAAGAGCTGAACATGAGCGAATGGCTGAGGCATACTCCATGATAAATAAAAAATTGCAGAATTCTATATCTGAACAGGAAAGTTTGGAAAAAGCCATTCAAGAACTGAAGGCTGACTTGAGGAGGCACGAACGTGATTATTCCCTTGTTCAAAAAGAGAATATGGATCTCCAGAAGCAGGTAACTGTCCTTTTGAAGGAGTGTCGTGATATTCAACTTCGGTGCGGATCTCGTATTTCTGAAAGTTTTGATAACGGGTCAAATATTGCTTCCTTTGAGATGAATGTAGATACTGATGCTGAAAAAGTTATATCAGAACGCCTTTTGACCTTTAAGGACATAAATGGATTGGTTGAGCAGAATGTTGAGCTGAGAAGCCTTGTTCGCAATCTTTCTAACCAGCTTGATAATAGAGAACTAGAGTTTAAGGAGAAGTTGGAAGTGGAGATCAAGATTCGTACTGATGAAGCGGCATCAAAAGTTGCTGCTGTTTTGCAGAGAGCTGAAGAGCAAGGGCAGATGATTGATTCCCTTCACTCTTCTGTTTCTATGTACAAAAGGCTCTATGAAGATGAGCAAACTCGAAATCTGACTCGGCCCAAACCTGCTGGAACTTCTCCAGAGGTTGGAAGAACAGACCTCAAGTTACTACTGGATAGTTCTCAGGAGGCTAGTAGAGTTGCCAAAGAGCAAGCTGCAGAACGTGTGAGATGTCTGGAAGAAGATCTGGCAAAGTCTAGGAGTGAAATTATTTTATTACGATCCGAACGTGACAAATTAAATCTCGAGGCCAGTTTCGCTAGAGGAAAGCTTGATAGTTTTGTAAAAGAATTTGAGCATCAGAGAGTTGAAATGAGCGGCATATTAGCTAGGAACGTGGAGTTTTCACATTTACTAATTGACTATCAAAAAAAAGTGCGTGAAAGGTCTGAATCCTTGCATGCTGCTGAGGAGATTTCTCGGAAGTTGAGTATGGAGGTATCTATTTTAAAGCATGAAAAGGAAATGATGTCAAGTGCTGAAAAGAAAGCCAATGATGAAATACGTTCACTTTCAGAGAGAGTATTCCGTCTACAGGCTAGTTTGGACACTATTCATACGGTTGAAGACATTCGCGAGGAGGCAAGAGCTTCAGAAAGAAAAAAGCAAGAGGACTATGTTAAACATCTTGAGATTGAATGGGCTGATGCTAAGAAAGAGCTGCTAGATGAACGAGAAAATGTTCGTGCTCTTACACTCGAGCGTGAGAAAATAATAAAGAATGCCATGGCCCAAGTTGAAAATATGGGTAAAGAACTAGCTAATGCTTTGCATGCTGTTGCAGCTGCTGAGGCACGAGCTGCAGTTGCAGAGGTGGATGTTTCGTTTCTTTTGTATTTCTTTAAAAAAAATCAGTGCATTGCTTTAAACACACCTTTATATTTACTCAGAAACTTAAATAGCAATGGTATGGAATTGCGTATTGCTAAAGAAAACATTGAAAAATTTAAAGAAGAAGCACGAGCTAATAAGGATCATATGATTCAGTATAAAAACATTGCTCAAGTAAATGAAGATGCCTTGAAACAGTTAGAATTCGCTCATGAGAACTTCAAGATTGAGGCTGACAAGCTCAGAACATCACTGGAAGCTGACCTCCTTTCACTTAGATCAAGGGTTTCGGATCTTGAAAATGAATTAATTTTGAAATCAAAAGAAATGGCTTCTACTGCGGCTGGGAAAGAGGAGGCCCTTGCTTCTTCTTTGACTGAAATTACCAGTCTGAAAGAAGAAATTGCAGCAAAAATTTCTCAAATCATCACATTTGAAATTCAGACTTCTGCTTTGAGAGAAGAGTTAGAAAGAGAGCATCAGAAATGGCGTGATGCTCAAACCAATTACGAAAGACAGGTTATTCTCCAGTCTGAGACAATTCAGGAATTGACAAGAACCTCACAAGCGTTGGCCAAACTTCAAGAGGAAACAGCGGAACTTCGGAGATCAGCAGATGTCCTCGAAAGTGAAAATAAAGAACTAAAGGCCAAATGGCTCACAGAGAAGGTCGTTCTAGAGGAATCGAGGAAGGAAGCTGAGAAAAAATATAATGATCTAAATGAACAGAACAAAATTTTGCACGGCCGGCTGGAGGCTTTGCACATACAATTTGCTGAGAAAGATCGCAATTCTGCTGGAATGTCCTATGGAAGCACTACTTCAGATCAGTCCGGGGAAGCTGGTTTACAAAATGTGATTAGTTATCTCAGAAGAACAAAAGAGATTGCAGAAACAGAGATCACTTTGTTAAAACAGGAAAAATTGCGATTGCAATCACAACTTGAAAGTGCTCTCAAAGCTATGGAAACTGCACAAACATCACTTCATGCTGAGCGTGCTACTTCAAGTGCCCGAGTGTTCACAGAGGAGGAAATCAAATCCTTACAACTTCAGATCGGAGAGATGAATTTACTTCGTGAAAGCAATATGCAACTTCGAGAAGAAAACAAGCATAATTTTGAGGAATGCCAGAAATTGCAAGAAGTTACGCAAAAAGGTAGAGTGGAGGTTGAGAACCTTCAGACATTAGTGAAAGAAAAACAGGTGGAGATGGAATCCTTGAAGAAGATGGTTGAAACACTGAAGACGGATAGATATCACCTCGAAAACAGAGTGTCAGAGTTACTTGATCGGACAAATCATGTGGACGTGGAGGACTATAATCAATTAAAAAATGTTGTTCAACTAATGAAGGATAAATTGAACGAAAAGGAAGTTCAATCTGAAGAACTTCATAAGCGTGTATCGGAGATGCAGGGAGCAATATCCCAATTAGAGGAAGACCTTTCGAAGTGTAGAGTTGAGCTAAATGAGAGGGAAAGAAGGTTGAATGATATTATAAAAATTGAGGCTACTTTAAAGCTAGACGTGGAGAAGCAGAAAAAGGCTTTAGCGCAGTATAAGAGGAAGTTTGAAGTCATTTCCAAGGAAAAGGAGGGACTGGTCGTGGAGAACCAAGCTCTTTCTAAGCAGATGGAGGATATCAAACAAGGTAGGAAAAAGCCTGGCGCGGATACTGCAGGTGAACAGGCCATAGAGGAGAAGGACACAAGAATTCAGATTCTGGAAAAGCATATGGAGAGGCTAAGGGAGGAACTAAAAAAGGAGAAGGGAGACAGTCAAGCAGAGAAAAACTTGCGATTGAATATTGAGAAGGCAATAGATCAAACAAAGCTCATAAATGAACTAGAAAAGCACAAACGAGCCTTGAAGCAACTCTTTGACGAATTTGAAAAACTAAAGCTTTCAAAATCCAATCTTCCAGAGGATGCAACATTGGTTCAGCTTCTCTCAGGGACTGCCTTGGACGATCCTGCTTTATCCTATCTTTCAACGCTTGAAAGTCTTGAAAAGGCTGCACAGTCAATCCTTTCTAGTGAACTTGAAGACCGTCAAGCTTCTCCAGAGACTTCGATGATTGCTGACAGTACAACAGTTCCCACTCAGAATCCTGGATTTGCACCTTCTGTGGATTCTGGGATAACACATATACCTGGAAAAGCAACAGAAGAAATTGAGAAGAGACCTTCGCTCAAGACAAATATTGAAACCCGAAAAATAGCAAGGAAGTTGCTTCGGCCCCAGCTGGCTAAACCTGATGAGCCACAGGCAGATGTAGAAATGGCTGAAATGGAACCACCAAACATAAGTGGAAAGTCCACCTCGCAGGTTCCTAGACTGATGCGCAAACGGTTAGCTTCTTCCAGTTCGGAAGTACATGAACATGTAGCCCTTCAAGGACTCCCTAGCACTGAAGTTACACCTATGTTGAAGAAATCTAAAGGTTCAGATTCCACACTTGAGGGTGCTGAAGGTCAATCAGTTGTCCCTTTGGAAAGCCTTGGAACTCAGCCAGCTTCTGAAGAAGTTTCTGATATTTATGAGATTCCTCAGGGTTTAAGTGAGGAAGCTCTTGATGCTGAGCGAGATGTGGTTGAAACGGCTAGGGAGAAGGTTGATGTACCAAAAGAAGAAGAATCAGATAAAACAAATCAACTTGAGTATCAAACTTCAAGGAAGAATGATGAAGAGAATTTGGGTAGTGCAGCTGGAGCAGAGGTGGAAACAGATGACACGATTAAAGATCAGGCTGAGATGGAAAGTGGTCAACTAGTGGTCGAAAGTGGAAGCGAAAGAGAAGAGGGAGAGTTGTTGCCGGACACAGTCGACCACGAGATTAGTGGACATTTGATGGAGATTACTGAAGGAGGGGATGCCCCATCTGAGAGAGTTGCTACACCTTTGATTCCATCGGTTAAGGCTGATAATGAATCTCTAGCTGCCACAGCACTGGAAGCTGGTGAGATAAATTCTCCTGAATCCCCTAATGAAGACAAGAATGATGACGTTGATATAACTGAGGAAATCACTGGAGATGTAGACAACTTCGGTGAGGGGACAGCTGGAGGATTAGAGAAGTCTGACGATGCAAACGACGAGGTTGCCGGAGAGGTAGCTCAGGCCGAAAGGAATTCAGGTGACAAAATTTTATCTACCACTGTTGTAGAAGCTAATTTTTCCAGAAGAGCCAGTCCTAGTGTCACCGGAGAAGCTAGGGAGGTGAGGCGGATCTCTCCTCCGGGCAGTACTCCTTCAACTACTATAAACTTGCAAGAAAGAGCAAAGGAGAGGGCTTTGCTTAGGCAGGCTGCGGTGATGACCCCTTCACCCAGTCGAGGACGAGGAAGAACAACAGTCCGTGGTAGGGTTGCTCGAGGCGGACGTACTGCTCGAGGCGGCCGTAGTCAACCGGGTGAACATAATTAA 6114 42.13 MSAGDLPKRGANVLKGHENVVLAARFNGDDNYCLTYGKDRTICLWIPHRGIHIKTYKCHGREVRDVHVTAFSLSLSLSDNSKLCSCSGDRQIFYWDVSTGRVIRKFCGHDGEIIEAFLDTVMSVCLTKMEIVSFSESAAKREARLGEIESELVRSQATCARLVQEKELIERHNVWLNDELTTKVDSLIELRRSHSDFEADMCSKVSNVQRQLDECSSSLQWNKDRVRELEIKLTSLQEELCTSKDTAAVNEERLSAELSTVNKLVELYKESSDEWSRKSGGLEGVVKALETHLTQVESDCKEKLEKEESLRKQFEREAANLKMKLEECEAEMESSRKENELNLLPLSRFTSDRWISSLETDDAVNDNQMLIPKIPLGISGTAFAASLLRDGWSLAKMYAKYQETADSLRHEQLGRKETEAVLQRVLYELEEKAEVILDERAEHERMAEAYSMINKKLQNSISEQESLEKAIQELKADLRRHERDYSLVQKENMDLQKQVTVLLKECRDIQLRCGSRISESFDNGSNIASFEMNVDTDAEKVISERLLTFKDINGLVEQNVELRSLVRNLSNQLDNRELEFKEKLEVEIKIRTDEAASKVAAVLQRAEEQGQMIDSLHSSVSMYKRLYEDEQTRNLTRPKPAGTSPEVGRTDLKLLLDSSQEASRVAKEQAAERVRCLEEDLAKSRSEIILLRSERDKLNLEASFARGKLDSFVKEFEHQRVEMSGILARNVEFSHLLIDYQKKVRERSESLHAAEEISRKLSMEVSILKHEKEMMSSAEKKANDEIRSLSERVFRLQASLDTIHTVEDIREEARASERKKQEDYVKHLEIEWADAKKELLDERENVRALTLEREKIIKNAMAQVENMGKELANALHAVAAAEARAAVAEVDVSFLLYFFKKNQCIALNTPLYLLRNLNSNGMELRIAKENIEKFKEEARANKDHMIQYKNIAQVNEDALKQLEFAHENFKIEADKLRTSLEADLLSLRSRVSDLENELILKSKEMASTAAGKEEALASSLTEITSLKEEIAAKISQIITFEIQTSALREELEREHQKWRDAQTNYERQVILQSETIQELTRTSQALAKLQEETAELRRSADVLESENKELKAKWLTEKVVLEESRKEAEKKYNDLNEQNKILHGRLEALHIQFAEKDRNSAGMSYGSTTSDQSGEAGLQNVISYLRRTKEIAETEITLLKQEKLRLQSQLESALKAMETAQTSLHAERATSSARVFTEEEIKSLQLQIGEMNLLRESNMQLREENKHNFEECQKLQEVTQKGRVEVENLQTLVKEKQVEMESLKKMVETLKTDRYHLENRVSELLDRTNHVDVEDYNQLKNVVQLMKDKLNEKEVQSEELHKRVSEMQGAISQLEEDLSKCRVELNERERRLNDIIKIEATLKLDVEKQKKALAQYKRKFEVISKEKEGLVVENQALSKQMEDIKQGRKKPGADTAGEQAIEEKDTRIQILEKHMERLREELKKEKGDSQAEKNLRLNIEKAIDQTKLINELEKHKRALKQLFDEFEKLKLSKSNLPEDATLVQLLSGTALDDPALSYLSTLESLEKAAQSILSSELEDRQASPETSMIADSTTVPTQNPGFAPSVDSGITHIPGKATEEIEKRPSLKTNIETRKIARKLLRPQLAKPDEPQADVEMAEMEPPNISGKSTSQVPRLMRKRLASSSSEVHEHVALQGLPSTEVTPMLKKSKGSDSTLEGAEGQSVVPLESLGTQPASEEVSDIYEIPQGLSEEALDAERDVVETAREKVDVPKEEESDKTNQLEYQTSRKNDEENLGSAAGAEVETDDTIKDQAEMESGQLVVESGSEREEGELLPDTVDHEISGHLMEITEGGDAPSERVATPLIPSVKADNESLAATALEAGEINSPESPNEDKNDDVDITEEITGDVDNFGEGTAGGLEKSDDANDEVAGEVAQAERNSGDKILSTTVVEANFSRRASPSVTGEAREVRRISPPGSTPSTTINLQERAKERALLRQAAVMTPSPSRGRGRTTVRGRVARGGRTARGGRSQPGEHN 2037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3777895 3817923 - Bma016770.1 Bma03g00486 79159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00486 2037 PANTHER NUCLEOPROTEIN TPR-RELATED 130 2027 - -
Bma03g00486 2037 Coils Coil 457 498 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1591 1611 - -
Bma03g00486 2037 Coils Coil 1286 1320 - -
Bma03g00486 2037 SUPERFAMILY WD40 repeat-like 12 114 IPR036322 GO:0005515
Bma03g00486 2037 Coils Coil 426 446 - -
Bma03g00486 2037 Coils Coil 552 579 - -
Bma03g00486 2037 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 45 IPR001680 GO:0005515
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1957 1985 - -
Bma03g00486 2037 Gene3D - 4 133 IPR015943 GO:0005515
Bma03g00486 2037 Coils Coil 1399 1426 - -
Bma03g00486 2037 Coils Coil 1189 1216 - -
Bma03g00486 2037 PANTHER NUCLEOPROTEIN TPR 130 2027 - -
Bma03g00486 2037 Coils Coil 286 338 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1591 1605 - -
Bma03g00486 2037 Coils Coil 1336 1391 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 2002 2037 - -
Bma03g00486 2037 Coils Coil 1048 1068 - -
Bma03g00486 2037 Coils Coil 667 701 - -
Bma03g00486 2037 Coils Coil 857 884 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1875 1943 - -
Bma03g00486 2037 Coils Coil 219 239 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1765 1790 - -
Bma03g00486 2037 Coils Coil 1072 1145 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1681 1738 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1765 1810 - -
Bma03g00486 2037 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 45 - -
Bma03g00486 2037 Coils Coil 924 944 - -
Bma03g00486 2037 Coils Coil 1461 1495 - -
Bma03g00486 2037 Pfam TPR/MLP1/MLP2-like protein 1022 1149 IPR012929 GO:0006606
Bma03g00486 2037 Coils Coil 977 997 - -
Bma03g00486 2037 Coils Coil 1920 1940 - -
Bma03g00486 2037 SMART WD40_4 49 96 IPR001680 GO:0005515
Bma03g00486 2037 SMART WD40_4 7 46 IPR001680 GO:0005515
Bma03g00486 2037 Coils Coil 1505 1532 - -
Bma03g00486 2037 MobiDBLite consensus disorder prediction 1705 1719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00486 K09291 TPR, MLP1, MLP2; nucleoprotein TPR - jre:108979354 2055.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00486 Bma-Chr3:3777895 Bma13g00214 Bma-Chr13:3102812 1.27E-58 dispersed
Bma03g00486 Bma-Chr3:3777895 Bma15g00188 Bma-Chr15:1940254 3.66E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00486 Bma_Chr03 FPKM 11.887227 13.104112 14.114133 14.522772 23.07172 22.713154 23.445585 25.217213 22.425152 24.37298