Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00487 ATGGGAAAGAAGGCTGTATTGATCGGATGCAATTATTCGGGAACTAAGGCTGAGCTCAAAGGCTGCATCAATGATGTTAAGAGGATGTACCAGTGTCTCATCGATCGCTACGGTTTCTCCGAAGACGACGTCACAGTCCTCATCGACACCGACGATTCTTACACTCAGCCCACTGGAAAGAACATTCGTGCTGCCTTAGCGCATCTGGTCGGATCGGCGGAGGCTGGGGATGTTCTCTTTGTTCACTACAGCGGACATGGGACTCGTCTTCCGGCCGAGACCGGGGAGGAAGACGATACTGGCTACGATGAGTGTATCGTCCCTTGTGATATGAACCTCATCACTGATGAGGATTTTAAGGAGTTAGTAGAGAAAGTACCAGAGGATTGCCGTCTCATCATCGTCTCAGATTCTTGCCACAGTGGTGGTCTCATTCAAAATACCAAAGAACAGATAGGCGAGAGCACTAAGCGTCTTGACGAGGAGGAAGAAGAACCATCCTCGCATTTTGGATTCAGGAGCTTTCTGCATCAGACTGCCCAAAGTGCTTTAGAGTCCCGTGGTATACAGCTTCCATCTGCACTGCGTCATGTTCATCGCCATCATAATCCCGATGAAGAAGAATCAGCCCGAGAGGTTGACATTGGATATGAAGGGGGAGGCTATGTCAAAAATAGGTCACTTCCTCTCTCCACTCTCATTGAGATCCTGAAGCAGAAAACAGGGAAAGACGACATAGATGTGGGGAAGCTACGACCAAGCCTGTTCGATATATTTGGGGAGGATTCCAGCCCCAAGGTGAAGAAATTCATGAAGGTCATCATGACTAAACTCCAACATGGTGAAGGGGAAAACGAAGGTGGTGGTTCTAGTGGGATGTTTGGAATGATTGGCAATTTGGCCCAGGAGTTCTTGAAGCAAAAGCTAGAAGAAAACAATGAAGACTATGCAAAACCTGCGATGGAAACTGATGTGGGGGGTAAAGAGGAGGTCTATGCAGGGGCAACAAAGCGTTCATTTCCTCATAATGGAATTCTGATCAGTGGATGCCAAACTGACCAAACTTCAGCGGATGCCAGCCCCTCTGGAAATTCAGCAAATGCTTACGGTGCTCTGAGCAATGCAATTCAGACCATACTTGAAGAATCAGATGGCTCAGTTACTTACCAGGAGCTGGTTTTGAAGGCCAGGGATAAACTGAAGGGCCAAGGCTTCACCCAGCGACCTGGTCTCTATTGCTCGGATGACTATGCTGATGCTCCTTTCGTTTGC 1272 48.19 MGKKAVLIGCNYSGTKAELKGCINDVKRMYQCLIDRYGFSEDDVTVLIDTDDSYTQPTGKNIRAALAHLVGSAEAGDVLFVHYSGHGTRLPAETGEEDDTGYDECIVPCDMNLITDEDFKELVEKVPEDCRLIIVSDSCHSGGLIQNTKEQIGESTKRLDEEEEEPSSHFGFRSFLHQTAQSALESRGIQLPSALRHVHRHHNPDEEESAREVDIGYEGGGYVKNRSLPLSTLIEILKQKTGKDDIDVGKLRPSLFDIFGEDSSPKVKKFMKVIMTKLQHGEGENEGGGSSGMFGMIGNLAQEFLKQKLEENNEDYAKPAMETDVGGKEEVYAGATKRSFPHNGILISGCQTDQTSADASPSGNSANAYGALSNAIQTILEESDGSVTYQELVLKARDKLKGQGFTQRPGLYCSDDYADAPFVC 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3824590 3826211 + Bma030974 Bma03g00487 79160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00487 424 Gene3D - 1 189 - -
Bma03g00487 424 Gene3D - 315 422 - -
Bma03g00487 424 PANTHER METACASPASE 4-RELATED 1 424 - -
Bma03g00487 424 PANTHER METACASPASE-4 1 424 - -
Bma03g00487 424 Coils Coil 145 165 - -
Bma03g00487 424 SUPERFAMILY Caspase-like 5 122 IPR029030 -
Bma03g00487 424 Pfam Caspase domain 3 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00487 - - - vvi:100241522 630.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00474 Bma-Chr3:3635554 Bma03g00487 Bma-Chr3:3824590 0 dispersed
Bma03g00487 Bma-Chr3:3824590 Bma05g00592 Bma-Chr5:35850889 1.28E-18 dispersed
Bma03g00487 Bma-Chr3:3824590 Bma06g01263 Bma-Chr6:49745158 1.55E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1182 Blo04g00453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00927 . Bma03g00487 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006948 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00487 Bma_Chr03 FPKM 19.394737 17.53437 23.463091 21.778913 11.828309 10.40804 11.637045 16.839638 18.153708 20.628664