Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00488 ATGTTCCACCCAAAGAAGCCATCAACTATGAATTCTCATGATCAAAGATCTTCCATGTGTGTCCAAGGCGACTCGGGACTAGTTCTCACCACCGACCCGAAACCCCGCCTCCGGTGGACCGTCGAGCTCCATGCTCGCTTTGTCGATGCAGTCACCCAGCTTGGAGGCCCTGATACTTCTTCGTTAGAACTTCAACGAAACGTAGCATCTTCATCTAATGTTATTGGCCGCAATAAGAACGATAACTCGCACATGGTGGATGCAATTAAGATGCAGATGGAGGTGCAGAGAAGACTGCATGAACAACTAGAGGTGCAAAGACACCTTCAACTGAGAATCGAAGCACAAGGGAAGTACATGCAAAATATACTAGAAAAGGCTTGTCAAACTCTTGTCGGTGAGAATATGGGCTGTGGAGGATCGTCCTTTAAGACAATGGTTCCATGTTTTCAAGACCTGAACATTTGTGGAGGAGACCAGCTTGATCTGGAGCAAAATATAGATAATTTTCTTCCGGTCAATGACGATATTTGTCTAGAAAAGAAGGCAGGAAGCTCGTATAGCAACGGTGGAAAGAGCCCTCTTCTTTGGTCAGATGATCTTCAACTTCACATGTTGGGGCCGACGATGACTTCTTCTGGTGGTTTTAAAGGAGAGAGAGTCGTCGATCTAGACTCCATTTCTGATATCTATGACACAAAGCCATAG 708 45.62 MFHPKKPSTMNSHDQRSSMCVQGDSGLVLTTDPKPRLRWTVELHARFVDAVTQLGGPDTSSLELQRNVASSSNVIGRNKNDNSHMVDAIKMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLVGENMGCGGSSFKTMVPCFQDLNICGGDQLDLEQNIDNFLPVNDDICLEKKAGSSYSNGGKSPLLWSDDLQLHMLGPTMTSSGGFKGERVVDLDSISDIYDTKP 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3841540 3842897 - Bma016771.1 Bma03g00488 79161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00488 235 Gene3D - 33 115 - -
Bma03g00488 235 Pfam MYB-CC type transfactor, LHEQLE motif 85 130 IPR025756 -
Bma03g00488 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 59 206 - -
Bma03g00488 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 59 - -
Bma03g00488 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 59 206 IPR044848 GO:0003700
Bma03g00488 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 59 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00488 - - - vri:117908572 292.737
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00488 Bma08g00825 CCT
Bma03g00488 Bma12g00569 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00488 Bma-Chr3:3841540 Bma12g00569 Bma-Chr12:24779078 1.35E-62 dispersed
Bma03g00488 Bma-Chr3:3841540 Bma08g00825 Bma-Chr8:46047913 2.71E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00488 Bma_Chr03 FPKM 11.872352 13.155723 7.571465 8.458229 4.113556 3.194418 3.640593 11.114167 10.754484 11.646422