Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00490 ATGAAATGCAGATACTCGTCTTTCAACTTCGCGACTCTCTCAGACGGCCATCACTATAAGAGCTACTGCGGATCCATTCCACCGTCTCCGTCATCTCACCCGTGTTCTCTTTCTTTTTCTTTGGCCATGTCCTTCTCGCAGCCCATCAACTTTGGTGCTTCTCCTTCGCTGCTATCAGCTTCTCCGCTTCATGGAGGTGATCCAAGAGCAAAACCCAAAATCATTCCATCGTGCTTTGAAGAAACGAAAGAAAAAATTAGGCAAATGATCAATAATGTCGAACTTTCAGTTTCCTCGTATGACACTGCTTGGGTGGCCATGGTCCCCTCTCCTAACTCCCCGGATGCCCCATTTTTTCCTCAATGTGTGAACTGGTTATTGGAAAATCAGCGCAGTGACGGCTCCTGGGGCCAAGCTCATTCGAATTCGTTGTTAATGAAGGACACTCTCTCATCTACCTTAGCATGCATCATTGCTCTGAAGCGATGGGATGTTGGTTTGGAACATATGAACAAGGGTCTAGATTTTATGGATAAAAATTTAGCTCTCGCTAATAATCCGAAGCAACATTCTCCTGTTGGGTTTAATATAATTTTCCCTGGTATGATTGAGATGTCTCAAAGTTTGGGTCTGAATCTTTCCCTGGAACATTCCAGTTTAAATGCTTTGGTTCAGGAGAGAGAGTTGGAGCTTAGAAGAGGTAGAAGTGCCTATTTATCTTACATTTCTGAAGGAATTGAGAAACAAGACTGGGAAATGGTCATGAAATATCAAAGGAAAAACGGTTCGCTATTTAACTCGCCGTCGACCTCTGCCGCTGCTTTTACTCACACAAAGAATGGCGGATGTCTTAATTACCTCTGCATGCTACTAGCAAAGTTTGGCAATGCAGTTCCAACAATATATCCTCTGGACCTAACTGCTCGTTTACACACGGTCGATCACCTTCAAAGATTGGGAATTGATCAACATTTTCAGAAGGAAATCAAAAGTGTGCTTGACGAAACTTACAGATGCTGGCTGCAGGGAGATGAAGATATATTTCTTGATGTCAGCACTTGCGCTATGGCCTTCCGGTTATTACGAGTTAATGGATACGATGTTTCTTCAGATCTCCTAACTCAATATACAGAGGAAGACGAGTTTTCCAATTGTCTCGGAGGGTATCTGAATGACATTGCCTCCACTCTAGAATTATTCAAGGCTTCTCAAATTATGTTACATTCAGACGAGCATGTTCTTGAACAAGTAAATTCCTGGACGAGGAATTTCCTGAATTGCAAATTAGTAAAAAATACAACACGAAGGGATAGACTCTCCAATGACATTGAGGAAGAGGTGAAAGATGCTCTTATGTTTACCTATCATTCAACTTTGGAACGAATTTCAAACAAAAAGGCGATAGATCATTACAGCACAGACAGTACAAGAATCTTAAAAACTTCATATAGGTGCTTAAATTTTGGTCATGAAGATGTCCTAAAACTAGCAGTAGACAACTATAATACATGTCAAAGTATACATCGTAAAGAACTTGAAGATCTTGCAAGGTGGATCGTAGAGACAAAATTGGACAAGCTAAAGTTTGCCAGACAAAAACTGGAGTATTGCTACCTCTCGGCTTCGGCATCCCTTCCTTCTCCCGAACTTTCTGAATCCCGTTTATCATGGACCAAGGGCGGGGTCCTCACGACCGTAGTTGACGATTTCTTTGATGTTGGTGGCTCTGAAGAGGAACTAATTAACCTCATACAATTGGTAGAGAGGTGGGATATAAATTCAGGTGTGGATTATTGTTCAGAGGCAGTCGAGATTATATTTACAGCTCTTCATGGAACAGTTTGTGAGATTGGCGACAGAGCCTCAATACGGCAAGGGCGCCCAGTAACGAGTCACATAATTGACATATGGTTGGACCTGCTCAAGTCTATGCTGAAGGAATTCGAATGGATGAGAGACAAAGTAGTCCCACCCATGGATGATTATATGTCAAATAGTTGCATATCATTTGCCTTGGGACCTATAGTCCTTCCAGCCCTCTATTTTGTCGGTCCAAAGCTTTCGAAGGAGATAATCGGAAATGTGGAATATAGAAATCTATTTAAGCTGATGAGTACTTGCGGGCGTCTTCTCAACGATATACAGGGTTTGAGGTATAGATTACACTCAGCTAAGAGCCATTTTGTTTGTTAA 2193 41.91 MKCRYSSFNFATLSDGHHYKSYCGSIPPSPSSHPCSLSFSLAMSFSQPINFGASPSLLSASPLHGGDPRAKPKIIPSCFEETKEKIRQMINNVELSVSSYDTAWVAMVPSPNSPDAPFFPQCVNWLLENQRSDGSWGQAHSNSLLMKDTLSSTLACIIALKRWDVGLEHMNKGLDFMDKNLALANNPKQHSPVGFNIIFPGMIEMSQSLGLNLSLEHSSLNALVQERELELRRGRSAYLSYISEGIEKQDWEMVMKYQRKNGSLFNSPSTSAAAFTHTKNGGCLNYLCMLLAKFGNAVPTIYPLDLTARLHTVDHLQRLGIDQHFQKEIKSVLDETYRCWLQGDEDIFLDVSTCAMAFRLLRVNGYDVSSDLLTQYTEEDEFSNCLGGYLNDIASTLELFKASQIMLHSDEHVLEQVNSWTRNFLNCKLVKNTTRRDRLSNDIEEEVKDALMFTYHSTLERISNKKAIDHYSTDSTRILKTSYRCLNFGHEDVLKLAVDNYNTCQSIHRKELEDLARWIVETKLDKLKFARQKLEYCYLSASASLPSPELSESRLSWTKGGVLTTVVDDFFDVGGSEEELINLIQLVERWDINSGVDYCSEAVEIIFTALHGTVCEIGDRASIRQGRPVTSHIIDIWLDLLKSMLKEFEWMRDKVVPPMDDYMSNSCISFALGPIVLPALYFVGPKLSKEIIGNVEYRNLFKLMSTCGRLLNDIQGLRYRLHSAKSHFVC 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3851248 3855512 + Bma016772.4 Bma03g00490 79163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00490 730 Pfam Terpene synthase, N-terminal domain 250 451 IPR001906 GO:0010333|GO:0016829
Bma03g00490 730 SFLD Terpene Cyclase Like 1 N-term 79 484 - -
Bma03g00490 730 Pfam Terpene synthase family, metal binding domain 494 717 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bma03g00490 730 Gene3D - 88 501 IPR036965 GO:0010333|GO:0016829
Bma03g00490 730 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 89 718 - -
Bma03g00490 730 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 260 474 IPR008930 -
Bma03g00490 730 SUPERFAMILY Terpenoid synthases 491 717 IPR008949 -
Bma03g00490 730 CDD Terpene_cyclase_plant_C1 302 716 IPR044814 GO:0010333|GO:0016102
Bma03g00490 730 Gene3D - 96 291 - -
Bma03g00490 730 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 89 718 - -
Bma03g00490 730 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 99 273 IPR008930 -
Bma03g00490 730 Gene3D Farnesyl Diphosphate Synthase 504 727 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00490 K04121 E4.2.3.19; ent-kaurene synthase [EC:4.2.3.19] - jre:108998981 844.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00490 Bma08g00824 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00490 Bma-Chr3:3851248 Bma15g00601 Bma-Chr15:7586302 4.15E-79 dispersed
Bma03g00490 Bma-Chr3:3851248 Bma08g00824 Bma-Chr8:46034044 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1165 Blo04g00457 . . . . . Bma08g00824 . . . . . . . . . . Bhi05g01987 . . . . . . . . . . . . . . . . . . Csa07g01217 . . . . . . Bpe15g00924 . Bma03g00490 . . . . . . . . Cpe15g00909 . . . . . . . . . . . . . . . . . Chy01g00846 Cme01g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003981 2 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 2 2 1 1 1 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00490 Bma_Chr03 FPKM 5.397504 6.268708 7.216701 6.343424 5.345057 5.601843 6.224838 7.124519 6.272704 7.809566