Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00494 ATGGCGTACATGTTCAAATATGATTCTACACATGGAGGATTCAAAGGAACCATCAAGTTATTGGATGATTCCATTTTGGAAATTAATGGGAAGCAAATAAAAGTTATTAGCAAAAGGGACCCAGCTGAGATTCCTTGGGATGGTTATGGGGCAGAGTTTGTTGTTGAATCATCCGGTGTTTTCACAACCACGGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCCAAAAAAGTAGTCATATCAGCTCCATCTGCAGATGCTCCTATGTTTGTAGTTGGAGTTAATGAGAAGAGTTACAAACCAAACATGGATATTGTCTCAAATGCAAGCTGTACAACAAATTGTCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTTTGGAAGGTCTTATGACAACTGTTCATGCAACTACAGGTTCTCTCTCTCTCTCTCCCTCTTTTTTCCCTCTCTCTAATACTAACAAGGTTTTTTTTTCTTCTTTTTTCTGTTTATCAGCAACTCAGAAGACTGTTGATGGACCTTCAATGAAGGATTGGCGAGGAGGCCGTGGAGCAGGTCAAAATATAATTCCTAGTTCGACAGGAGCTGCAAAGGCTGTAGGAAAAGTTCTCCCTGAACTTAATGGAAAACTTACTGGAATGGCATTCCGTGTTCCTACACCAAATGTATCTGTTGTGGACTTAACTTGTAGACTTCAGAAGAAGGCATCTTATGATGATGTAAAAGCTGTAATCAAGTATGCAGCTGAAGGTCAACTTAGAGGCATCCTCGGGTACACTGATGAAGATGTTGTTTCCAATGATTTTGTTGGTGATTCAAGGTCAAGTATATTTGATGCCAAGGCCGGAATAGGTCTCAGCACCTCCTTCATGAAGTTCATCGCATGGTACGACAACGAATGGGGATACAGGTACTCTCTCACCCTCTCTCTCACCCGCTCTCTCTTATGCATGCATAATGATGTTTTTTCATTGTTTTCGCAGCAATCGAACCAAAAAATGGACGAAAGCGAGAATACAACTGAATCTTCATGGAGGCTTAACCTCGACGAGTTTCGAACGCCCATGCTTAACAGCGACGATCACCTCCATCGTCCCTATCCATTCTGTAAGCAATATAGGATCGTTGAGTATTACAAGAACCAAAAGATGCTCCTCCAAGGGTTTGATGAGATGGAGACCATGAATGAATCTGGGTCTTTTCCTGGAAATCTAACTGAGGACGAAATAAATCAGCTTGCGAGAAGCGAGAGGATAGCAATTCACGCGTCAAACATAGCCAATATCGTTCTTTTTGTGGCGAAAGTTTATGCATCAGTCGAGAGTAGATCATTGGCTGTCATAGCCTCAACTTTAGATTCCTTCTTGGATCTCATATCAGGGTTTATTCTCTGGTTCACCACCAACGCCATGAAAAACCCAAACCACTATCACTATCCAATCGGAAAAAATCGAATGCAGCCCGTGGGCATCATCGTGTTTGCATCAGTAATGGCGACTCTCGGGTTACAAATACTGTTGGAGTCTGCTAGGCAACTCCTTGCAAAGTCTAAGCCCAGCACAGATGGAGAGAAGGAGAAGTGGATGATCGCGATTATGCTATTTGCCATGGTCGTGAAGTTTGTGCTAATGATCTACTGCAAAAGATTTAGAAACGACATAGTCAGAGCCTATGCTCAAGATCATTTTTTCGACGTCATCACAAATTCAGTCGGCCTAGGAGCCGCCGTTCTGTCCATCCATTACTTCTGGTGGATCGATCCCACAGGCGCCATAATAATAGCACTCTACACAATAAACACATGGGCAAGGACGGTAATGGAGAACGTGACGTCGCTGATCGGAAGAACGGCGCCGCCGGATTTCTTGGCGAAGATAACGTACTTGATATGGAACCACGACAAGGAGATAAAGAAGATAGACACGGTGAGGGCGTACACATTTGGAAGCCATTACTTTGTGGAAGTAGACATAGTTTTGGCGGAGGACATGCTGCTGAGCCAAGCGCATAACATTGGGGAGACTTTGCAAGAGAAGCTGGAGCAGCTTCCTCAGGTGGAGCGCGCATTTGTGCACATTGATTTCGAGTTCACTCACGCCCCTGAGCATAAGCCCAAGCTCAAGCCTTGA 2139 44.13 MAYMFKYDSTHGGFKGTIKLLDDSILEINGKQIKVISKRDPAEIPWDGYGAEFVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKSYKPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTGSLSLSPSFFPLSNTNKVFFSSFFCLSATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKKASYDDVKAVIKYAAEGQLRGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSTSFMKFIAWYDNEWGYRYSLTLSLTRSLLCMHNDVFSLFSQQSNQKMDESENTTESSWRLNLDEFRTPMLNSDDHLHRPYPFCKQYRIVEYYKNQKMLLQGFDEMETMNESGSFPGNLTEDEINQLARSERIAIHASNIANIVLFVAKVYASVESRSLAVIASTLDSFLDLISGFILWFTTNAMKNPNHYHYPIGKNRMQPVGIIVFASVMATLGLQILLESARQLLAKSKPSTDGEKEKWMIAIMLFAMVVKFVLMIYCKRFRNDIVRAYAQDHFFDVITNSVGLGAAVLSIHYFWWIDPTGAIIIALYTINTWARTVMENVTSLIGRTAPPDFLAKITYLIWNHDKEIKKIDTVRAYTFGSHYFVEVDIVLAEDMLLSQAHNIGETLQEKLEQLPQVERAFVHIDFEFTHAPEHKPKLKP 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3879568 3890693 - Bma016776.1 Bma03g00494 79167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00494 712 SUPERFAMILY Cation efflux protein transmembrane domain-like 419 618 IPR027469 -
Bma03g00494 712 Gene3D - 1 130 - -
Bma03g00494 712 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 70 83 IPR020831 GO:0016620
Bma03g00494 712 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 132 148 IPR020831 GO:0016620
Bma03g00494 712 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 105 123 IPR020831 GO:0016620
Bma03g00494 712 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 127 IPR036291 -
Bma03g00494 712 TIGRFAM CDF: cation diffusion facilitator family transporter 426 697 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Bma03g00494 712 Gene3D Dihydrodipicolinate Reductase; domain 2 154 302 - -
Bma03g00494 712 Pfam Cation efflux family 426 616 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Bma03g00494 712 PANTHER METAL TOLERANCE PROTEIN 9 330 709 - -
Bma03g00494 712 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 330 709 - -
Bma03g00494 712 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 169 300 IPR020829 GO:0016620
Bma03g00494 712 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 116 143 IPR020829 GO:0016620
Bma03g00494 712 Pfam Dimerisation domain of Zinc Transporter 622 697 IPR027470 -
Bma03g00494 712 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 109 116 IPR020830 GO:0016620
Bma03g00494 712 Gene3D Cation efflux protein transmembrane domain 422 616 IPR027469 -
Bma03g00494 712 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 621 697 IPR036837 -
Bma03g00494 712 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 111 301 - -
Bma03g00494 712 SMART gp_dh_n_7 1 111 IPR020828 GO:0051287
Bma03g00494 712 Gene3D Cation efflux protein, cytoplasmic domain 620 698 IPR036837 -
Bma03g00494 712 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 63 IPR020828 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00494 - - - dcr:108211948 581.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00661 Bma-Chr2:18754875 Bma03g00494 Bma-Chr3:3879568 7.77E-81 dispersed
Bma03g00115 Bma-Chr3:904188 Bma03g00494 Bma-Chr3:3879568 3.06E-151 dispersed
Bma03g00307 Bma-Chr3:2301258 Bma03g00494 Bma-Chr3:3879568 8.91E-149 dispersed
Bma03g00494 Bma-Chr3:3879568 Bma13g00574 Bma-Chr13:12207273 2.44E-139 dispersed
Bma03g00494 Bma-Chr3:3879568 Bma08g01129 Bma-Chr8:50189027 3.63E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00494 Bma_Chr03 FPKM 45.455311 48.83651 38.462341 39.402016 23.151911 19.100344 25.966354 55.297382 56.689514 53.654572