Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00494 ATGGCGTACATGTTCAAATATGATTCTACACATGGAGGATTCAAAGGAACCATCAAGTTATTGGATGATTCCATTTTGGAAATTAATGGGAAGCAAATAAAAGTTATTAGCAAAAGGGACCCAGCTGAGATTCCTTGGGATGGTTATGGGGCAGAGTTTGTTGTTGAATCATCCGGTGTTTTCACAACCACGGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCCAAAAAAGTAGTCATATCAGCTCCATCTGCAGATGCTCCTATGTTTGTAGTTGGAGTTAATGAGAAGAGTTACAAACCAAACATGGATATTGTCTCAAATGCAAGCTGTACAACAAATTGTCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTTTGGAAGGTCTTATGACAACTGTTCATGCAACTACAGGTTCTCTCTCTCTCTCTCCCTCTTTTTTCCCTCTCTCTAATACTAACAAGGTTTTTTTTTCTTCTTTTTTCTGTTTATCAGCAACTCAGAAGACTGTTGATGGACCTTCAATGAAGGATTGGCGAGGAGGCCGTGGAGCAGGTCAAAATATAATTCCTAGTTCGACAGGAGCTGCAAAGGCTGTAGGAAAAGTTCTCCCTGAACTTAATGGAAAACTTACTGGAATGGCATTCCGTGTTCCTACACCAAATGTATCTGTTGTGGACTTAACTTGTAGACTTCAGAAGAAGGCATCTTATGATGATGTAAAAGCTGTAATCAAGTATGCAGCTGAAGGTCAACTTAGAGGCATCCTCGGGTACACTGATGAAGATGTTGTTTCCAATGATTTTGTTGGTGATTCAAGGTCAAGTATATTTGATGCCAAGGCCGGAATAGGTCTCAGCACCTCCTTCATGAAGTTCATCGCATGGTACGACAACGAATGGGGATACAGGTACTCTCTCACCCTCTCTCTCACCCGCTCTCTCTTATGCATGCATAATGATGTTTTTTCATTGTTTTCGCAGCAATCGAACCAAAAAATGGACGAAAGCGAGAATACAACTGAATCTTCATGGAGGCTTAACCTCGACGAGTTTCGAACGCCCATGCTTAACAGCGACGATCACCTCCATCGTCCCTATCCATTCTGTAAGCAATATAGGATCGTTGAGTATTACAAGAACCAAAAGATGCTCCTCCAAGGGTTTGATGAGATGGAGACCATGAATGAATCTGGGTCTTTTCCTGGAAATCTAACTGAGGACGAAATAAATCAGCTTGCGAGAAGCGAGAGGATAGCAATTCACGCGTCAAACATAGCCAATATCGTTCTTTTTGTGGCGAAAGTTTATGCATCAGTCGAGAGTAGATCATTGGCTGTCATAGCCTCAACTTTAGATTCCTTCTTGGATCTCATATCAGGGTTTATTCTCTGGTTCACCACCAACGCCATGAAAAACCCAAACCACTATCACTATCCAATCGGAAAAAATCGAATGCAGCCCGTGGGCATCATCGTGTTTGCATCAGTAATGGCGACTCTCGGGTTACAAATACTGTTGGAGTCTGCTAGGCAACTCCTTGCAAAGTCTAAGCCCAGCACAGATGGAGAGAAGGAGAAGTGGATGATCGCGATTATGCTATTTGCCATGGTCGTGAAGTTTGTGCTAATGATCTACTGCAAAAGATTTAGAAACGACATAGTCAGAGCCTATGCTCAAGATCATTTTTTCGACGTCATCACAAATTCAGTCGGCCTAGGAGCCGCCGTTCTGTCCATCCATTACTTCTGGTGGATCGATCCCACAGGCGCCATAATAATAGCACTCTACACAATAAACACATGGGCAAGGACGGTAATGGAGAACGTGACGTCGCTGATCGGAAGAACGGCGCCGCCGGATTTCTTGGCGAAGATAACGTACTTGATATGGAACCACGACAAGGAGATAAAGAAGATAGACACGGTGAGGGCGTACACATTTGGAAGCCATTACTTTGTGGAAGTAGACATAGTTTTGGCGGAGGACATGCTGCTGAGCCAAGCGCATAACATTGGGGAGACTTTGCAAGAGAAGCTGGAGCAGCTTCCTCAGGTGGAGCGCGCATTTGTGCACATTGATTTCGAGTTCACTCACGCCCCTGAGCATAAGCCCAAGCTCAAGCCTTGA 2139 44.13 MAYMFKYDSTHGGFKGTIKLLDDSILEINGKQIKVISKRDPAEIPWDGYGAEFVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKSYKPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTGSLSLSPSFFPLSNTNKVFFSSFFCLSATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKKASYDDVKAVIKYAAEGQLRGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSTSFMKFIAWYDNEWGYRYSLTLSLTRSLLCMHNDVFSLFSQQSNQKMDESENTTESSWRLNLDEFRTPMLNSDDHLHRPYPFCKQYRIVEYYKNQKMLLQGFDEMETMNESGSFPGNLTEDEINQLARSERIAIHASNIANIVLFVAKVYASVESRSLAVIASTLDSFLDLISGFILWFTTNAMKNPNHYHYPIGKNRMQPVGIIVFASVMATLGLQILLESARQLLAKSKPSTDGEKEKWMIAIMLFAMVVKFVLMIYCKRFRNDIVRAYAQDHFFDVITNSVGLGAAVLSIHYFWWIDPTGAIIIALYTINTWARTVMENVTSLIGRTAPPDFLAKITYLIWNHDKEIKKIDTVRAYTFGSHYFVEVDIVLAEDMLLSQAHNIGETLQEKLEQLPQVERAFVHIDFEFTHAPEHKPKLKP 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3879568 3890693 - Bma016776.1 Bma03g00494 79167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00494 712 SUPERFAMILY Cation efflux protein transmembrane domain-like 419 618 IPR027469 -
Bma03g00494 712 Gene3D - 1 130 - -
Bma03g00494 712 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 70 83 IPR020831 GO:0016620
Bma03g00494 712 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 132 148 IPR020831 GO:0016620
Bma03g00494 712 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 105 123 IPR020831 GO:0016620
Bma03g00494 712 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 127 IPR036291 -
Bma03g00494 712 TIGRFAM CDF: cation diffusion facilitator family transporter 426 697 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Bma03g00494 712 Gene3D Dihydrodipicolinate Reductase; domain 2 154 302 - -
Bma03g00494 712 Pfam Cation efflux family 426 616 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Bma03g00494 712 PANTHER METAL TOLERANCE PROTEIN 9 330 709 - -
Bma03g00494 712 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 330 709 - -
Bma03g00494 712 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 169 300 IPR020829 GO:0016620
Bma03g00494 712 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 116 143 IPR020829 GO:0016620
Bma03g00494 712 Pfam Dimerisation domain of Zinc Transporter 622 697 IPR027470 -
Bma03g00494 712 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 109 116 IPR020830 GO:0016620
Bma03g00494 712 Gene3D Cation efflux protein transmembrane domain 422 616 IPR027469 -
Bma03g00494 712 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 621 697 IPR036837 -
Bma03g00494 712 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 111 301 - -
Bma03g00494 712 SMART gp_dh_n_7 1 111 IPR020828 GO:0051287
Bma03g00494 712 Gene3D Cation efflux protein, cytoplasmic domain 620 698 IPR036837 -
Bma03g00494 712 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 63 IPR020828 GO:0051287
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00661 Bma-Chr2:18754875 Bma03g00494 Bma-Chr3:3879568 7.77E-81 dispersed
Bma03g00115 Bma-Chr3:904188 Bma03g00494 Bma-Chr3:3879568 3.06E-151 dispersed
Bma03g00307 Bma-Chr3:2301258 Bma03g00494 Bma-Chr3:3879568 8.91E-149 dispersed
Bma03g00494 Bma-Chr3:3879568 Bma13g00574 Bma-Chr13:12207273 2.44E-139 dispersed
Bma03g00494 Bma-Chr3:3879568 Bma08g01129 Bma-Chr8:50189027 3.63E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00494 - - dcr:108211948 581.637