Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00495 CAGCATAAATTGGGCAGAGGTCACCGTGACAAACTCCAGCAGTTTATGACTATAACTGGTGCGAGTGAAAAGATTGCTCTTCAGGCTTTGAAAGCAAGTGATTGGCATCTTGAAGGAGCATTTGATGCATTTTACAGTCAACCGCAAATTAAAACATTTACTGATTCGAGACATTTGGAAGAGCTTTATAATAGATATAGAGGCAAGCTTCCCCTTCTATGGTTGGATCTTTCGTCTTTTATGAAGTCTTTAAATTATCCTCGCATTGATATGATACTGGCTGATGGTATCACTACCCTCTGCAGTGATATTCAGGTAAAGGGTTTGGCTTTGGTTGTCTCGTGGCACATGAAGGCAAATACTATGTGTGAATTTTCAAAACAGGAGTTTATAGGTGGATTGCTATCCTTGGGGATTGATTCCCTTGAGAAATTTCGGGAAAGGATACCATTTATGCGCTCAGAGCTGAAAGATGAACATAAGTTCCGTGAAATCTACATCTTTGCATTTGGATGGGCAAAAGAAAAGGGTCAAAAATCTCTGGCATTGGACACGGCTATAGGAATGTGGCAATTACTGTTTGCTGAAAGCCAGTGGCCCCTGGTTGATCACTGGTGTCAATTCCTACAGGTTCGGCACAATAAAGCAATCTCAAGGGACACATGGTCTCAGCTATTGGAGTTTGCTAGGACGGTAGACCATACACTATCAAATTACGACGCAGAAGGAGCTTGGCCATATCTAATTGATGAATTCGCCGAATACTTAAATGAGAATGGGATTATCCAAAATGAG 795 41.38 QHKLGRGHRDKLQQFMTITGASEKIALQALKASDWHLEGAFDAFYSQPQIKTFTDSRHLEELYNRYRGKLPLLWLDLSSFMKSLNYPRIDMILADGITTLCSDIQVKGLALVVSWHMKANTMCEFSKQEFIGGLLSLGIDSLEKFRERIPFMRSELKDEHKFREIYIFAFGWAKEKGQKSLALDTAIGMWQLLFAESQWPLVDHWCQFLQVRHNKAISRDTWSQLLEFARTVDHTLSNYDAEGAWPYLIDEFAEYLNENGIIQNE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3884439 3886993 + Bma030976 Bma03g00495 79168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00495 265 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 84 264 - -
Bma03g00495 265 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 13 67 - -
Bma03g00495 265 PANTHER RP42 RELATED 84 264 IPR014764 -
Bma03g00495 265 Gene3D Cullin, PONY binding domain 158 263 IPR042460 -
Bma03g00495 265 Gene3D - 52 157 - -
Bma03g00495 265 SUPERFAMILY UBA-like 7 46 IPR009060 GO:0005515
Bma03g00495 265 Pfam UBA-like domain 9 47 - -
Bma03g00495 265 CDD UBA_DCNL 8 48 - -
Bma03g00495 265 Pfam Cullin binding 145 255 IPR005176 -
Bma03g00495 265 ProSiteProfiles DCUN1 domain profile. 54 257 IPR005176 -
Bma03g00495 265 Gene3D - 6 47 - -
Bma03g00495 265 PANTHER RP42 RELATED 13 67 IPR014764 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00495 Bma08g00821 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00495 Bma-Chr3:3884439 Bma13g00685 Bma-Chr13:18520770 2.47E-21 dispersed
Bma03g00495 Bma-Chr3:3884439 Bma08g00821 Bma-Chr8:45907827 1.51E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00495 K17822 - tcc:18594929 429.483