Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00497 ATGGCTACCAAGAGGAGCGTGGGCACTCTGACGGAGGCTGATTTGAACGGGAAGAGAGTGTTTATGAGAGTGGATCTGAATGTCCCATTGGATGATAACTTCAATATCACTGACGACACAAGAATTCGCGCTGCCGTGCCTACTATCAAGTACTTGTTAGGTCATGGAGCTAGGGTTATCCTTTCCAGCCACTTGAAATTTGGTTTGAAACAATTGGTGCAATTGTTCCTTCAGGGACGCCCAAAAGGTGTGACACCCAAATATAGTTTGAAGCCTCTTGTGGCAAGACTATCTGAACTCCTTGGCACTGAGGTTAAAATTGCTAACGATTGTATTGGCGAGGAAGTTGAGACATTGGTCGCTGAATTACCTAATGGAGGTGTATTGCTTCTTGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAACGACCCTGAGTTTGCAAAGAAGCTAGCTTCTCTTGGAGATATCTATGTGAATGATGCATTTGGAACTGCTCATAGAGCTCATGCTTCAACAGAGGGAGTGGCTAAATACTTAAAACCGTCTGTTGCTGGATTTCTTATGCAGAAGGAACTTGACTATCTTGTTGGAGCTGTTGCAAATCCCAAGAGACCGTTTGCTGCCATTGTTGGTGGGTCAAAGGTATCTTCAAAGATTGGCGTGATTGAGTCCTTACTGGAGAAGGTTGACGTTCTCTTGTTGGGAGGAGGAATGATCTTTACCTTCTACAAGGCGCAAGGGTATTCAGTTGGGTCATCCCTCGTTGAGGAAGACAAGCTTGATCTTGCAACCTCCCTTATGGAGAAGGCCAAAAATAAGGGGGTTTCTTTGCTACTTCCAACTGATGTGGTGATTGCTGATAAATTTGCTCCTGATGCCAATAGCATGATCGTTCCGGCATCAGGTATCCCAGATGGTTGGATGGGATTGGATATTGGACCTGATTCCATCAAGACATTCAAGGAAGCTTTGGATTCAACAAAAACAATAATTTGGAATGGACCCATGGGCGTGTTTGAGTTTGATAAGTTTGCTGCTGGAACAGAGGCAATTGCCAGGAAGCTTGCAGACCTCAGTGGAAACGTGACAACCATTATTGGAGGAGGAGACTCTGTGGCAGCAGTGGAAAAGGTTGGGCTTGGGGACAAGATGAGCCACATCTCCACCGGAGGTGGTGCCAGCTTAGAGCTTCTTGAAGGGAAGCCACTTCCGGGTGTCCTTGCTCTTGACGATGCTTGA 1242 46.05 MATKRSVGTLTEADLNGKRVFMRVDLNVPLDDNFNITDDTRIRAAVPTIKYLLGHGARVILSSHLKFGLKQLVQLFLQGRPKGVTPKYSLKPLVARLSELLGTEVKIANDCIGEEVETLVAELPNGGVLLLENVRFYKEEEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLMEKAKNKGVSLLLPTDVVIADKFAPDANSMIVPASGIPDGWMGLDIGPDSIKTFKEALDSTKTIIWNGPMGVFEFDKFAAGTEAIARKLADLSGNVTTIIGGGDSVAAVEKVGLGDKMSHISTGGGASLELLEGKPLPGVLALDDA 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3899461 3901953 - Bma016778.1 Bma03g00497 79170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00497 413 CDD Phosphoglycerate_kinase 10 412 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PIRSF Pgk 3 413 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PANTHER PHOSPHOGLYCERATE KINASE 3 413 - -
Bma03g00497 413 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618|GO:0006096
Bma03g00497 413 Pfam Phosphoglycerate kinase 11 402 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 Hamap Phosphoglycerate kinase [pgk]. 9 412 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 Gene3D - 8 197 IPR015824 GO:0004618|GO:0006096
Bma03g00497 413 PANTHER PHOSPHOGLYCERATE KINASE 3 413 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 Gene3D - 200 412 IPR015824 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 126 141 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 208 227 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 365 376 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 154 176 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 388 405 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 330 355 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 185 207 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 SUPERFAMILY Phosphoglycerate kinase 8 412 IPR036043 GO:0004618|GO:0006096
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00037 Bma-Chr10:408949 Bma03g00497 Bma-Chr3:3899461 1.02E-41 transposed
Bma12g00579 Bma-Chr12:25156246 Bma03g00497 Bma-Chr3:3899461 0 transposed
Bma03g00497 Bma-Chr3:3899461 Bma08g00819 Bma-Chr8:45895131 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00497 K00927 - tcc:18594857 699.893