Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00497 ATGGCTACCAAGAGGAGCGTGGGCACTCTGACGGAGGCTGATTTGAACGGGAAGAGAGTGTTTATGAGAGTGGATCTGAATGTCCCATTGGATGATAACTTCAATATCACTGACGACACAAGAATTCGCGCTGCCGTGCCTACTATCAAGTACTTGTTAGGTCATGGAGCTAGGGTTATCCTTTCCAGCCACTTGAAATTTGGTTTGAAACAATTGGTGCAATTGTTCCTTCAGGGACGCCCAAAAGGTGTGACACCCAAATATAGTTTGAAGCCTCTTGTGGCAAGACTATCTGAACTCCTTGGCACTGAGGTTAAAATTGCTAACGATTGTATTGGCGAGGAAGTTGAGACATTGGTCGCTGAATTACCTAATGGAGGTGTATTGCTTCTTGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAACGACCCTGAGTTTGCAAAGAAGCTAGCTTCTCTTGGAGATATCTATGTGAATGATGCATTTGGAACTGCTCATAGAGCTCATGCTTCAACAGAGGGAGTGGCTAAATACTTAAAACCGTCTGTTGCTGGATTTCTTATGCAGAAGGAACTTGACTATCTTGTTGGAGCTGTTGCAAATCCCAAGAGACCGTTTGCTGCCATTGTTGGTGGGTCAAAGGTATCTTCAAAGATTGGCGTGATTGAGTCCTTACTGGAGAAGGTTGACGTTCTCTTGTTGGGAGGAGGAATGATCTTTACCTTCTACAAGGCGCAAGGGTATTCAGTTGGGTCATCCCTCGTTGAGGAAGACAAGCTTGATCTTGCAACCTCCCTTATGGAGAAGGCCAAAAATAAGGGGGTTTCTTTGCTACTTCCAACTGATGTGGTGATTGCTGATAAATTTGCTCCTGATGCCAATAGCATGATCGTTCCGGCATCAGGTATCCCAGATGGTTGGATGGGATTGGATATTGGACCTGATTCCATCAAGACATTCAAGGAAGCTTTGGATTCAACAAAAACAATAATTTGGAATGGACCCATGGGCGTGTTTGAGTTTGATAAGTTTGCTGCTGGAACAGAGGCAATTGCCAGGAAGCTTGCAGACCTCAGTGGAAACGTGACAACCATTATTGGAGGAGGAGACTCTGTGGCAGCAGTGGAAAAGGTTGGGCTTGGGGACAAGATGAGCCACATCTCCACCGGAGGTGGTGCCAGCTTAGAGCTTCTTGAAGGGAAGCCACTTCCGGGTGTCCTTGCTCTTGACGATGCTTGA 1242 46.05 MATKRSVGTLTEADLNGKRVFMRVDLNVPLDDNFNITDDTRIRAAVPTIKYLLGHGARVILSSHLKFGLKQLVQLFLQGRPKGVTPKYSLKPLVARLSELLGTEVKIANDCIGEEVETLVAELPNGGVLLLENVRFYKEEEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLMEKAKNKGVSLLLPTDVVIADKFAPDANSMIVPASGIPDGWMGLDIGPDSIKTFKEALDSTKTIIWNGPMGVFEFDKFAAGTEAIARKLADLSGNVTTIIGGGDSVAAVEKVGLGDKMSHISTGGGASLELLEGKPLPGVLALDDA 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3899461 3901953 - Bma016778.1 Bma03g00497 79170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00497 413 CDD Phosphoglycerate_kinase 10 412 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PIRSF Pgk 3 413 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PANTHER PHOSPHOGLYCERATE KINASE 3 413 - -
Bma03g00497 413 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618|GO:0006096
Bma03g00497 413 Pfam Phosphoglycerate kinase 11 402 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 Hamap Phosphoglycerate kinase [pgk]. 9 412 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 Gene3D - 8 197 IPR015824 GO:0004618|GO:0006096
Bma03g00497 413 PANTHER PHOSPHOGLYCERATE KINASE 3 413 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 Gene3D - 200 412 IPR015824 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 126 141 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 208 227 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 365 376 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 154 176 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 388 405 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 330 355 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 PRINTS Phosphoglycerate kinase family signature 185 207 IPR001576 GO:0004618|GO:0006096
Bma03g00497 413 SUPERFAMILY Phosphoglycerate kinase 8 412 IPR036043 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00497 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - tcc:18594857 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00037 Bma-Chr10:408949 Bma03g00497 Bma-Chr3:3899461 1.02E-41 transposed
Bma12g00579 Bma-Chr12:25156246 Bma03g00497 Bma-Chr3:3899461 0 transposed
Bma03g00497 Bma-Chr3:3899461 Bma08g00819 Bma-Chr8:45895131 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1132 Blo04g00465 . . . Bpe07g00471 . . . . . . . . . Sed04g3516 . . Bhi05g01998 Tan02g0042 Cmetu01g1031 Lac12g0043 Hepe02g0016 . . . . . . . . . . . . . . . . . Blo15g00633 . . . . . Bma03g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00859 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00497 Bma_Chr03 FPKM 2.13116 2.437602 4.515417 3.80158 6.237853 7.98532 6.855454 7.612863 6.884486 7.570091