Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00501 ATGGCATCTTCGCTTATCGCAAAGACCCTTTTGGGTAGTGGACTGATTCATTCTTCCCTCTCTCTCACCAACAAAGCCCACCGTCTTACTCCTCTAATCAATAGGAGATCAATTCACTTGAGAGCTAAGCCAACATCTGTACCACATAAAATATCTGGTTTAGTTCCTCGTGTCATGGCTTCCTCAGTTGCTGGGAAAATAGTTGAATCTTCTACACAATCCTTATATTCAAATGAACCCGTTGTGTCTGTGGATTGGCTTCATGCTAACCTTAAAGAGCCTGAATTAAAGGTATTAGACGCATCATGGTACATGCCAGATGAACAGAGAAATCCAATCCAAGAATACCAGGTTGCTCATATTCCTGGTGCCCTTTTCTTTGATCTAGATGGGATAGCAGATCGAACCACAAAGTTGCCGCATATGTTGCCGTCGGAGGAAGGTTTTGCTGCTGCTGTATCTGCTCTTGGTATCCAGAACAAGGATGGAGTAGTTGTCTATGATGGGAAGGGAATTTTTAGTGCAGCCCGCGTCTGGTGGATGTTCCGAGTATTTGGACATGAAAGAGTGTGGGTGTTAGATGGTGGCCTACCAAGATGGCGTGCAGCTGGATATGATGTTGAATCTAGTGCTTCCAGTGATGCAATTCTGAAAGCTAGTGCCGCAAGTGAGGCAATAGAGAAAGTTTATCAAGGCCAGGCTGTTGGGCCAATCACATTTCAAACAAAATTTCAGCCACATCTTGTGTGGAGCATCGAACAGGTTAAAAGAAATATTGAGGAGAAATCTCATCTACTCATAGATGCAAGGTCAAAACCCAGATTTGATGGAGCTGTACCAGAGCCAAGGAAAGGTATAAGAAGTGGGCATGTCCCTGGCAGTAAGTGCATCCCTTTTCCCCAGATGCTGGACGCCTCGCAAACGCTCTTGCCATCAGATGAGCTCGAGAAACGATTTGTTCAAGAAGGCATCTCTTTGGAAGGTCCTCTCGTGACGTCTTGCGGCACTGGCGTTACTGCCTGCATTCTTGCATTGGGTCTCCATAGAATTGGAAAGTCTGATGCTGCAGTTTATGATGGATCTTGGACTGAATGGGGAGGGCAATCAGACACTCCGGTCGAAACGTCGCAATAG 1134 45.77 MASSLIAKTLLGSGLIHSSLSLTNKAHRLTPLINRRSIHLRAKPTSVPHKISGLVPRVMASSVAGKIVESSTQSLYSNEPVVSVDWLHANLKEPELKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGIADRTTKLPHMLPSEEGFAAAVSALGIQNKDGVVVYDGKGIFSAARVWWMFRVFGHERVWVLDGGLPRWRAAGYDVESSASSDAILKASAASEAIEKVYQGQAVGPITFQTKFQPHLVWSIEQVKRNIEEKSHLLIDARSKPRFDGAVPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPSDELEKRFVQEGISLEGPLVTSCGTGVTACILALGLHRIGKSDAAVYDGSWTEWGGQSDTPVETSQ 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3922965 3926096 - Bma016782.1 Bma03g00501 79174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00501 377 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792
Bma03g00501 377 PANTHER THIOSULFATE SULFERTANSFERASE 68 376 IPR045078 GO:0016783
Bma03g00501 377 PANTHER THIOSULFATE/3-MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MITOCHONDRIAL-LIKE 68 376 - -
Bma03g00501 377 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Bma03g00501 377 Gene3D - 245 375 IPR036873 -
Bma03g00501 377 SMART rhod_4 82 206 IPR001763 -
Bma03g00501 377 SMART rhod_4 250 371 IPR001763 -
Bma03g00501 377 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Bma03g00501 377 Coils Coil 252 272 - -
Bma03g00501 377 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 78 211 IPR036873 -
Bma03g00501 377 CDD TST_Repeat_2 251 366 - -
Bma03g00501 377 Pfam Rhodanese-like domain 252 366 IPR001763 -
Bma03g00501 377 Pfam Rhodanese-like domain 83 202 IPR001763 -
Bma03g00501 377 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792
Bma03g00501 377 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 253 376 IPR036873 -
Bma03g00501 377 Gene3D - 74 216 IPR036873 -
Bma03g00501 377 CDD TST_Repeat_1 81 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00501 K01011 TST, MPST, sseA; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] - tcc:18594871 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00501 Bma-Chr3:3922965 Bma08g01111 Bma-Chr8:50075068 2.03E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00501 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.2 2.0e-146 515.4
Bma03g00501 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.2 2.4e-113 405.2
Bma06g01161 . 1 430 Sulfurtransferasese/Rhodanese AT4G01050 52.4 4.6e-121 431.8
Bma04g00466 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 73.5 3.9e-83 304.7
Bma12g01059 . 1 236 Sulfurtransferasese/Rhodanese AT4G24750 71.2 3.0e-101 365.2
Bma07g00284 . 2 184 Sulfurtransferasese/Rhodanese AT5G19370 64.9 9.7e-63 237.3
Bma13g01072 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 72.2 2.3e-151 531.9
Bma12g01221 . 37 249 Sulfurtransferasese/Rhodanese AT4G27700 68.5 5.7e-76 280.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011657 2 1 1 1 0 0 2 0 0 1 0 1 2 1 1 2 0 2 2 0 0 1 1 0 1 0 1 1 3 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00501 Bma_Chr03 FPKM 39.369255 43.609413 10.401769 11.303553 17.014818 16.336809 13.476636 8.89013 7.425969 7.134497