Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00501 ATGGCATCTTCGCTTATCGCAAAGACCCTTTTGGGTAGTGGACTGATTCATTCTTCCCTCTCTCTCACCAACAAAGCCCACCGTCTTACTCCTCTAATCAATAGGAGATCAATTCACTTGAGAGCTAAGCCAACATCTGTACCACATAAAATATCTGGTTTAGTTCCTCGTGTCATGGCTTCCTCAGTTGCTGGGAAAATAGTTGAATCTTCTACACAATCCTTATATTCAAATGAACCCGTTGTGTCTGTGGATTGGCTTCATGCTAACCTTAAAGAGCCTGAATTAAAGGTATTAGACGCATCATGGTACATGCCAGATGAACAGAGAAATCCAATCCAAGAATACCAGGTTGCTCATATTCCTGGTGCCCTTTTCTTTGATCTAGATGGGATAGCAGATCGAACCACAAAGTTGCCGCATATGTTGCCGTCGGAGGAAGGTTTTGCTGCTGCTGTATCTGCTCTTGGTATCCAGAACAAGGATGGAGTAGTTGTCTATGATGGGAAGGGAATTTTTAGTGCAGCCCGCGTCTGGTGGATGTTCCGAGTATTTGGACATGAAAGAGTGTGGGTGTTAGATGGTGGCCTACCAAGATGGCGTGCAGCTGGATATGATGTTGAATCTAGTGCTTCCAGTGATGCAATTCTGAAAGCTAGTGCCGCAAGTGAGGCAATAGAGAAAGTTTATCAAGGCCAGGCTGTTGGGCCAATCACATTTCAAACAAAATTTCAGCCACATCTTGTGTGGAGCATCGAACAGGTTAAAAGAAATATTGAGGAGAAATCTCATCTACTCATAGATGCAAGGTCAAAACCCAGATTTGATGGAGCTGTACCAGAGCCAAGGAAAGGTATAAGAAGTGGGCATGTCCCTGGCAGTAAGTGCATCCCTTTTCCCCAGATGCTGGACGCCTCGCAAACGCTCTTGCCATCAGATGAGCTCGAGAAACGATTTGTTCAAGAAGGCATCTCTTTGGAAGGTCCTCTCGTGACGTCTTGCGGCACTGGCGTTACTGCCTGCATTCTTGCATTGGGTCTCCATAGAATTGGAAAGTCTGATGCTGCAGTTTATGATGGATCTTGGACTGAATGGGGAGGGCAATCAGACACTCCGGTCGAAACGTCGCAATAG 1134 45.77 MASSLIAKTLLGSGLIHSSLSLTNKAHRLTPLINRRSIHLRAKPTSVPHKISGLVPRVMASSVAGKIVESSTQSLYSNEPVVSVDWLHANLKEPELKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGIADRTTKLPHMLPSEEGFAAAVSALGIQNKDGVVVYDGKGIFSAARVWWMFRVFGHERVWVLDGGLPRWRAAGYDVESSASSDAILKASAASEAIEKVYQGQAVGPITFQTKFQPHLVWSIEQVKRNIEEKSHLLIDARSKPRFDGAVPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPSDELEKRFVQEGISLEGPLVTSCGTGVTACILALGLHRIGKSDAAVYDGSWTEWGGQSDTPVETSQ 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3922965 3926096 - Bma016782.1 Bma03g00501 79174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00501 377 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792
Bma03g00501 377 PANTHER THIOSULFATE SULFERTANSFERASE 68 376 IPR045078 GO:0016783
Bma03g00501 377 PANTHER THIOSULFATE/3-MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MITOCHONDRIAL-LIKE 68 376 - -
Bma03g00501 377 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Bma03g00501 377 Gene3D - 245 375 IPR036873 -
Bma03g00501 377 SMART rhod_4 82 206 IPR001763 -
Bma03g00501 377 SMART rhod_4 250 371 IPR001763 -
Bma03g00501 377 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Bma03g00501 377 Coils Coil 252 272 - -
Bma03g00501 377 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 78 211 IPR036873 -
Bma03g00501 377 CDD TST_Repeat_2 251 366 - -
Bma03g00501 377 Pfam Rhodanese-like domain 252 366 IPR001763 -
Bma03g00501 377 Pfam Rhodanese-like domain 83 202 IPR001763 -
Bma03g00501 377 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792
Bma03g00501 377 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 253 376 IPR036873 -
Bma03g00501 377 Gene3D - 74 216 IPR036873 -
Bma03g00501 377 CDD TST_Repeat_1 81 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00501 Bma-Chr3:3922965 Bma08g01111 Bma-Chr8:50075068 2.03E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00501 K01011 - tcc:18594871 612.068