Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00508 ATCAAAATGGCTCCAAGTTTTGAAGATGGTAACTCGCTTTTTGACTTCGTAGTCCGAGATGGAAACGGCGTCAAAGGAATGGTGGATTCCGGCCTATCCCAGGTACCAATCAGGTACATTCAACCGCCGCAAGAGCGTATCCAGAAGAATAACGCTGCCACCCTCGACCTGCCGCCAATCGATTTTTCGAAGCTCGATGGGCCTGACCACGATGCAGTGGCGGAGAGTATAGCCAGTGCTGCGGAGACTCTTGGGTTCCTTCAAGTTATTAACCATGGCGTGCCGTTGGATTTGCTCGAGTCTCTTAAAGAATCAGCACATGCCTTTTTCGGACAGCCATCGGAGAAGAAGGCTGTTTATCGCAAAGGTCATAGCCCTAGCCCCACCGTGAGCTACGGTACGAGTTTTGTGCCGGAGAAGGAAAATGCGTTGGAGTGGAAGGACTATATTAGTATGATGTATAAAAGCGACGAGGAGGCGCTTCAGTTTTGGCCGGAACAGTGCAGGGAAGTTGCTCTCGGGTACCTTAAATCATCGCTGAAAATGGTGAGAAAATTGTTAGAAGTGCTGTTGGAAAAGCTTGAGGTGACAGTAGAGGAGTCGAAAATAGATGCTCTGATTGGTATGAAGATGGTTAACATGAACTTCTACCCAACTTGTCCCAATCCGGAGCTCACGGTTGGCGTCGGCCGGCACTCAGACATGGGGACTTTAACAGTGCTGTTGCAGGACGGAATTGGTGGATTGTATGTGAAAGTTGAGGAAGACAGCGTCTCTGTTGGTAAGAAGGGGGAGTGGGTGGAGATCCCGCCTATTCCCGGCGCTCTCGTCATCAACATCGGCGATTCCTTACAGATATTGAGCAACGGGAAGTATAAAAGTGCTGAACACAGGGTTCGAACGACGAGCTCAAAGGCTCGAGTGTCGGTTCCGATCTTCACAATACCAAAAGGGGATGAGAAGATAGGGCCGTTGCCGGAGTTGGTCGAAAGAGACGGAGTGGCTCGATACAGAGAGTTTGTATTTTCGGAGTACATGAAGAACTTCTTTGCAAATGCCCATGAAGGGAAGAAGTCTCTGGATTTCGCAGCCGCCTGA 1098 49.73 IKMAPSFEDGNSLFDFVVRDGNGVKGMVDSGLSQVPIRYIQPPQERIQKNNAATLDLPPIDFSKLDGPDHDAVAESIASAAETLGFLQVINHGVPLDLLESLKESAHAFFGQPSEKKAVYRKGHSPSPTVSYGTSFVPEKENALEWKDYISMMYKSDEEALQFWPEQCREVALGYLKSSLKMVRKLLEVLLEKLEVTVEESKIDALIGMKMVNMNFYPTCPNPELTVGVGRHSDMGTLTVLLQDGIGGLYVKVEEDSVSVGKKGEWVEIPPIPGALVINIGDSLQILSNGKYKSAEHRVRTTSSKARVSVPIFTIPKGDEKIGPLPELVERDGVARYREFVFSEYMKNFFANAHEGKKSLDFAAA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3951258 3952653 + Bma016789.1 Bma03g00508 79181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00508 365 Pfam 2OG-Fe(II) oxygenase superfamily 211 314 IPR044861 -
Bma03g00508 365 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 166 IPR026992 -
Bma03g00508 365 PANTHER FERULOYL COA ORTHO-HYDROXYLASE 2-LIKE 4 357 - -
Bma03g00508 365 SUPERFAMILY Clavaminate synthase-like 23 356 - -
Bma03g00508 365 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 4 357 - -
Bma03g00508 365 Gene3D - 13 348 IPR027443 -
Bma03g00508 365 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 316 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00508 K23145 S8H; scopoletin 8-hydroxylase [EC:1.14.11.60] - pop:7480442 550.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00508 Bma-Chr3:3951258 Bma07g00224 Bma-Chr7:2652816 6.67E-132 dispersed
Bma03g00508 Bma-Chr3:3951258 Bma14g01935 Bma-Chr14:41293006 8.08E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1095 . Blo13g00589 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010310 2 0 1 2 3 0 0 0 0 1 0 0 0 0 2 0 0 6 0 0 1 3 0 0 0 3 1 0 2 3 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00508 Bma_Chr03 FPKM 28.721674 32.65963 40.829857 46.640476 11.758643 9.16534 13.031025 6.178718 5.793805 5.478201