Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00510 ATGGCCTCGATCTCTCTCATCGGCGCTCACGCTTTCGCACAGACTTCTCTCGCCTCATCACGACGCCCTCCTCTTGCCTACACTTCTCTTCCTCTGAGGCGGTGTGTTGGTTTCCACGATTGTTTTTCCGCTGCACCTAGGAGGTCGCCGGTTTTGGCTTCTGCCGATGTCGGCGTCGCTGACTTTACGCCGACAAGATCCTCTACGCATATTGTAGGCGATTTTATGACCAAAAAGGAGAAATTGCTTGTTGTCAAAACCACAACAAGTGTTGATGACGCATTGCAGTTACTTGTGGAAAAGAGAATAACTGGACTTCCTGTGATAGATGATGACTGGAACCTGGTTGGTGTTATTTCAGATTATGATTTACTGGCACTTGACACTATATCAGGTTGGGGTCACCATGATATAGACATATTTCCCGATGTTGATAGTTCTTGGAAGAATTTTTTTGAGATACAAAGGCTTCTTAGCAAGGCCAATGGCGAAGTTGTGGGAGACTTGATGACACCTGCACCTCTTGTTGTTCGTGAAACGACCAAGTTGGAAGATGCGGCCAGGTTGTTGCTTGAGACCCAGCATCATCGGTTGCCTGTTGTTGACAATGATGGAAAGCTGGTTGGCATCATCACGAGGGGAAACGTAGTTAAAGCTGCCCTCCAAATAAAACGCTACAGGGAGAATTCGATATGA 696 46.98 MASISLIGAHAFAQTSLASSRRPPLAYTSLPLRRCVGFHDCFSAAPRRSPVLASADVGVADFTPTRSSTHIVGDFMTKKEKLLVVKTTTSVDDALQLLVEKRITGLPVIDDDWNLVGVISDYDLLALDTISGWGHHDIDIFPDVDSSWKNFFEIQRLLSKANGEVVGDLMTPAPLVVRETTKLEDAARLLLETQHHRLPVVDNDGKLVGIITRGNVVKAALQIKRYRENSI 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3964733 3967691 - Bma016791.1 Bma03g00510 79183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00510 231 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE 11 227 - -
Bma03g00510 231 ProSiteProfiles CBS domain profile. 76 138 IPR000644 -
Bma03g00510 231 SUPERFAMILY CBS-domain pair 68 219 IPR046342 -
Bma03g00510 231 SMART cbs_1 173 221 IPR000644 -
Bma03g00510 231 SMART cbs_1 81 129 IPR000644 -
Bma03g00510 231 ProSiteProfiles CBS domain profile. 170 231 IPR000644 -
Bma03g00510 231 Pfam CBS domain 166 219 IPR000644 -
Bma03g00510 231 Pfam CBS domain 72 126 IPR000644 -
Bma03g00510 231 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 11 227 - -
Bma03g00510 231 Gene3D - 67 227 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00510 - - - csv:101220279 260.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00510 Bma-Chr3:3964733 Bma05g00510 Bma-Chr5:23582321 5.44E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00510 Bma_Chr03 FPKM 15.760381 17.546083 11.130946 11.468859 13.586505 13.857946 13.663741 16.715475 15.964803 15.285099