Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00511 | ATGGCTCAGATTCAACCTCCGTCTCAAAATGTGATGTCCGGTGTCAATCAAGGTCCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTAACAGATTCGCAGCTCTACGACCTATTTAATCAGGTCGGTCAGGTAGTTTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACATTCGCTTGGTTATGGTTACGTCAACTATGGCAATCCGCAAGATGGTGCTAGGGCATTGGACGTTCTGAACTTTACACCTATCAATGGGAAACCCATACGAGTAATGTATTCTCATCGCGACCCAAGCATCCGAAAAAGTGGTGCAGGAAATATCTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACATGAGACATTTTCCTCATTTGGGAATGTACTCTCCTGTAAGGTGGCCACAGACCAATCTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATAGTGAGGAATCTGCCCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTCGGGCCTTTCCTTCGCAAACAGGAAAGAGATAGTTCTGTCGAAAAATCAAAATTTAACAATGTGTATTTAAAAAATCTCTCTGAAGAAACCACTGAAGAAGATCTGCAAAAGATTTTTGGTGAATTTGGTCCCATCACAAGTATAGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATCCAGATGATGCAGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCAGATAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCAACGATGATAAGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAAGGGATCTGGGTTTGTGGCATTTTCCTCTTCTGAAGAAGCTTCTAGAGCGCTTTTGGAGATGAATGGAAAAATGGTCGCGAGCAAACCTCTATATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAAGCTCAGGCTGCAAGCACAATTTTCTCAGATGCAGCCTGTAGCAATGCCACCTTCTATCACCCCCCGGATGCCAATGTATCCAAATAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTCCGGCTCCGCCAGCTATAATTCCTTCCCAGGCTGGCTTTGGTTATCAGCAACAAATTGTTCCAGGCATGAGGCCTGGTGGGGCTCCGATGGCAAACTTTTTTGTGCCAATGGTTCAACAGGGACCGCAAGGACGTCCTGGTAGACGAGCTGGTGCTCTCCAGCAGACCCAGCAACCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGCCGTGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGAGGCATGTTTTCGGTTCCATATGACATGGGTGGCATGCCACTGCGTGATCCAGCTCTCTCTCAGCCAATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTAGTCCAGATCAGCAGAGAACAATGCTGGGTGAGAGTCTTTATCCACTCGTGGAGCAGCTCGAGCCTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTGCTCAGCAGCAGATTGGAAATGCAGCTGATCAGTTACTCTCATTGTCTCTCAACGACAAGCTGGATTCCTGA | 1944 | 45.11 | MAQIQPPSQNVMSGVNQGPIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRHSLGYGYVNYGNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHETFSSFGNVLSCKVATDQSGQSKGYGFVQFDSEESAQKAIEKLNGMLLNDKQVFVGPFLRKQERDSSVEKSKFNNVYLKNLSEETTEEDLQKIFGEFGPITSIAVMRDEDGKSKCFGFVNFENPDDAARSVEALNGKKFDGKEWYVGKAQKKSDRENELKAQFESSLKEAADKYQGANLYVKNLDDSINDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRALLEMNGKMVASKPLYVAPAQRKEERKLRLQAQFSQMQPVAMPPSITPRMPMYPNNSPGLSQQIFYGPAPPAIIPSQAGFGYQQQIVPGMRPGGAPMANFFVPMVQQGPQGRPGRRAGALQQTQQPVPLMQQQMVPRGRVYRYPPGRALPDVPMPGIAGGMFSVPYDMGGMPLRDPALSQPIPIGALASALANASPDQQRTMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQIGNAADQLLSLSLNDKLDS | 647 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3976725 | 3980793 | + | Bma016792.1 | Bma03g00511 | 79184 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00511 | 647 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 622 | IPR006515 | GO:0003723 | |
Bma03g00511 | 647 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Bma03g00511 | 647 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676 | |
Bma03g00511 | 647 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Bma03g00511 | 647 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676 | |
Bma03g00511 | 647 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676 | |
Bma03g00511 | 647 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 631 | - | - | |
Bma03g00511 | 647 | SUPERFAMILY | PABC (PABP) domain | 490 | 638 | IPR036053 | GO:0003723 | |
Bma03g00511 | 647 | CDD | RRM3_I_PABPs | 207 | 286 | - | - | |
Bma03g00511 | 647 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | PANTHER | RNA BINDING PROTEIN | 18 | 631 | - | - | |
Bma03g00511 | 647 | Gene3D | - | 119 | 190 | IPR012677 | - | |
Bma03g00511 | 647 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | Pfam | Poly-adenylate binding protein, unique domain | 557 | 621 | IPR002004 | GO:0003723 | |
Bma03g00511 | 647 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 278 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 32 | 101 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 381 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 186 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | Gene3D | - | 22 | 118 | IPR012677 | - | |
Bma03g00511 | 647 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
Bma03g00511 | 647 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 392 | IPR035979 | GO:0003676 | |
Bma03g00511 | 647 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723 | |
Bma03g00511 | 647 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
Bma03g00511 | 647 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Bma03g00511 | 647 | Gene3D | - | 295 | 399 | IPR012677 | - | |
Bma03g00511 | 647 | Gene3D | - | 193 | 294 | IPR012677 | - | |
Bma03g00511 | 647 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 549 | 626 | IPR002004 | GO:0003723 | |
Bma03g00511 | 647 | Gene3D | - | 545 | 628 | - | - | |
Bma03g00511 | 647 | SMART | poly_2 | 561 | 624 | IPR002004 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00511 | Bma-Chr3:3976725 | Bma04g01610 | Bma-Chr4:52037302 | 2.14E-21 | dispersed | |
Bma01g00658 | Bma-Chr1:5992093 | Bma03g00511 | Bma-Chr3:3976725 | 0 | transposed | |
Bma01g02525 | Bma-Chr1:82873009 | Bma03g00511 | Bma-Chr3:3976725 | 0 | transposed | |
Bma05g01222 | Bma-Chr5:51629348 | Bma03g00511 | Bma-Chr3:3976725 | 1.12E-06 | transposed | |
Bma10g00907 | Bma-Chr10:17646899 | Bma03g00511 | Bma-Chr3:3976725 | 6.24E-06 | transposed | |
Bma11g00941 | Bma-Chr11:41691506 | Bma03g00511 | Bma-Chr3:3976725 | 3.98E-06 | transposed | |
Bma14g00878 | Bma-Chr14:9890046 | Bma03g00511 | Bma-Chr3:3976725 | 1.01E-07 | transposed | |
Bma03g00511 | Bma-Chr3:3976725 | Bma08g00805 | Bma-Chr8:45649075 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00511 | K13126 | - | jre:108988866 | 1025.0 |