Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00511 ATGGCTCAGATTCAACCTCCGTCTCAAAATGTGATGTCCGGTGTCAATCAAGGTCCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTAACAGATTCGCAGCTCTACGACCTATTTAATCAGGTCGGTCAGGTAGTTTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACATTCGCTTGGTTATGGTTACGTCAACTATGGCAATCCGCAAGATGGTGCTAGGGCATTGGACGTTCTGAACTTTACACCTATCAATGGGAAACCCATACGAGTAATGTATTCTCATCGCGACCCAAGCATCCGAAAAAGTGGTGCAGGAAATATCTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACATGAGACATTTTCCTCATTTGGGAATGTACTCTCCTGTAAGGTGGCCACAGACCAATCTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATAGTGAGGAATCTGCCCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTCGGGCCTTTCCTTCGCAAACAGGAAAGAGATAGTTCTGTCGAAAAATCAAAATTTAACAATGTGTATTTAAAAAATCTCTCTGAAGAAACCACTGAAGAAGATCTGCAAAAGATTTTTGGTGAATTTGGTCCCATCACAAGTATAGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATCCAGATGATGCAGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCAGATAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCAACGATGATAAGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAAGGGATCTGGGTTTGTGGCATTTTCCTCTTCTGAAGAAGCTTCTAGAGCGCTTTTGGAGATGAATGGAAAAATGGTCGCGAGCAAACCTCTATATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAAGCTCAGGCTGCAAGCACAATTTTCTCAGATGCAGCCTGTAGCAATGCCACCTTCTATCACCCCCCGGATGCCAATGTATCCAAATAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTCCGGCTCCGCCAGCTATAATTCCTTCCCAGGCTGGCTTTGGTTATCAGCAACAAATTGTTCCAGGCATGAGGCCTGGTGGGGCTCCGATGGCAAACTTTTTTGTGCCAATGGTTCAACAGGGACCGCAAGGACGTCCTGGTAGACGAGCTGGTGCTCTCCAGCAGACCCAGCAACCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGCCGTGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGAGGCATGTTTTCGGTTCCATATGACATGGGTGGCATGCCACTGCGTGATCCAGCTCTCTCTCAGCCAATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTAGTCCAGATCAGCAGAGAACAATGCTGGGTGAGAGTCTTTATCCACTCGTGGAGCAGCTCGAGCCTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTGCTCAGCAGCAGATTGGAAATGCAGCTGATCAGTTACTCTCATTGTCTCTCAACGACAAGCTGGATTCCTGA 1944 45.11 MAQIQPPSQNVMSGVNQGPIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRHSLGYGYVNYGNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHETFSSFGNVLSCKVATDQSGQSKGYGFVQFDSEESAQKAIEKLNGMLLNDKQVFVGPFLRKQERDSSVEKSKFNNVYLKNLSEETTEEDLQKIFGEFGPITSIAVMRDEDGKSKCFGFVNFENPDDAARSVEALNGKKFDGKEWYVGKAQKKSDRENELKAQFESSLKEAADKYQGANLYVKNLDDSINDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRALLEMNGKMVASKPLYVAPAQRKEERKLRLQAQFSQMQPVAMPPSITPRMPMYPNNSPGLSQQIFYGPAPPAIIPSQAGFGYQQQIVPGMRPGGAPMANFFVPMVQQGPQGRPGRRAGALQQTQQPVPLMQQQMVPRGRVYRYPPGRALPDVPMPGIAGGMFSVPYDMGGMPLRDPALSQPIPIGALASALANASPDQQRTMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQIGNAADQLLSLSLNDKLDS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3976725 3980793 + Bma016792.1 Bma03g00511 79184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00511 647 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 622 IPR006515 GO:0003723
Bma03g00511 647 CDD RRM1_I_PABPs 30 109 - -
Bma03g00511 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Bma03g00511 647 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bma03g00511 647 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bma03g00511 647 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bma03g00511 647 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bma03g00511 647 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bma03g00511 647 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bma03g00511 647 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bma03g00511 647 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bma03g00511 647 PANTHER POLYADENYLATE-BINDING PROTEIN 18 631 - -
Bma03g00511 647 SUPERFAMILY PABC (PABP) domain 490 638 IPR036053 GO:0003723
Bma03g00511 647 CDD RRM3_I_PABPs 207 286 - -
Bma03g00511 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bma03g00511 647 PANTHER RNA BINDING PROTEIN 18 631 - -
Bma03g00511 647 Gene3D - 119 190 IPR012677 -
Bma03g00511 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bma03g00511 647 Pfam Poly-adenylate binding protein, unique domain 557 621 IPR002004 GO:0003723
Bma03g00511 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bma03g00511 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Bma03g00511 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bma03g00511 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Bma03g00511 647 Gene3D - 22 118 IPR012677 -
Bma03g00511 647 CDD RRM4_I_PABPs 310 388 - -
Bma03g00511 647 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Bma03g00511 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Bma03g00511 647 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bma03g00511 647 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bma03g00511 647 Gene3D - 295 399 IPR012677 -
Bma03g00511 647 Gene3D - 193 294 IPR012677 -
Bma03g00511 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 549 626 IPR002004 GO:0003723
Bma03g00511 647 Gene3D - 545 628 - -
Bma03g00511 647 SMART poly_2 561 624 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00511 Bma-Chr3:3976725 Bma04g01610 Bma-Chr4:52037302 2.14E-21 dispersed
Bma01g00658 Bma-Chr1:5992093 Bma03g00511 Bma-Chr3:3976725 0 transposed
Bma01g02525 Bma-Chr1:82873009 Bma03g00511 Bma-Chr3:3976725 0 transposed
Bma05g01222 Bma-Chr5:51629348 Bma03g00511 Bma-Chr3:3976725 1.12E-06 transposed
Bma10g00907 Bma-Chr10:17646899 Bma03g00511 Bma-Chr3:3976725 6.24E-06 transposed
Bma11g00941 Bma-Chr11:41691506 Bma03g00511 Bma-Chr3:3976725 3.98E-06 transposed
Bma14g00878 Bma-Chr14:9890046 Bma03g00511 Bma-Chr3:3976725 1.01E-07 transposed
Bma03g00511 Bma-Chr3:3976725 Bma08g00805 Bma-Chr8:45649075 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00511 K13126 - jre:108988866 1025.0