Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00512 ATGGATGCTTCAATAAACGATTCCGTCTTAGAAAAATTGAGAACATATGAGAAATCACAGGAAAAGCTGGAGGATCTGTTGAAAGAGAGCAGCAGGCAGGTTGGGAACTTAGCTATTGAAAATTCTAATCTGAGTAAAGCTCTTTTAGTCAAAGACAAAATGATTGATGATCTTCAGAAGCTCAAGACACGGGTCGATGCTGAATTAAATGTTCTGATAAGCAGACTAGATTCAACTGAAAAAGAAAATTCTTTTGTAAAGTATGAGTTTCGGATGCTGGAGAAAGAGCTCGAAGTTCGGAACGAAGAACTGGAATATAATCGCTTGTTTGTTGATGAGTCGTGCAAGCAACGCCTCGAGAATGAGAAGAAGATGACAGTTCTGGAAGCAGAATGTCAAAGACTCCGCCTTCTCATGCAAAAACGGCTGCCGAGTTCCGCTGCTTTGTCCAACATGAAGACTGAAGTTGATTTGCTTGGAAGGGGTCGGGCTGAAACGAGAAGAAATAAAAAAAATCCGAGCAGAGATCTGATTGCGAGAGATAACAATGCCGAAACTTTTGTTCAAATCCCTTCCAAACAGATTGATATAATCGTTGAGCAATTGCAAAGGATGGAAGAAGAAAACAAGTCTCTTAAAGAAATAATCACAAATAAGACCTTTGAGCTCCATTCTTCGAGAATCATGCATTCTAGAACTGCTTCAAGATTATCTCAGATGGAAAAGAGGCTTGGAGAGCTTTCTAACGACAAAAAAGCGATTGACCTCGCAATATGTTCATCTACGAGCAAAGATGGATTGAGTTCTTCTCGGGATAATGCTGTAGTATCAGTATTCAGAAATGTCGGAAGTGAGAAACTCAACAATTTTCCGGAAGCAAAAGCTTTAGACTTTTCAGACATGAGCTTGATGGATGATTTTGTTGAAATGGAGAGATTGGCATTAGTATCTGTGGAGACGCCTCGTAGAAGCGGGCATGATCATGACGATAAAACAGGTAAAGAACTCGTTCCGGTTAGTGTCGATCCCAGTTCCTGTGACATAAAAAGGGAAATTCACTCAAAAGAGGTAGAAATTGGGAATCCATTTGACTGGCTTCAGGTGGTTTTGAATGCAATGTCGGAGCAAAAGCGTATTTCAAACCGAAGCATGGAAGATATTTTTCGGGACATTAAAATTGCTTTGGGTTATGTAAATCACTTGGATTTTGAGGATGTTGAAAAAACAGCAGTTTCATTTACGGCAGCTTCCAATTTTGAAATCAAAGTCAGCCAAAATGTTCAATCCAAATCCAATATACACAAGTCAGTCTCGAAAATCATTGAACTGGTAGAAGGAATCTGTTCATCGAGCCATAACTATCAAGACAACTTGGCTGAAAGAAACCAAACATCATTAGGAGACTATTTTATCCACGTTTTCCGGTGGAACAAATCAGAGCTGAATGCTACTCTAAGGGGTTTCAGTCGCGTTTGTGATGATCTGTTGAATGGAAAAACTGATTTTGAGAAATTTGCTGAGGAACTAAGATTTACTTTAGATTGGATTTTAGAAAACTACAAAAGGGTGGGTTGGGAGATCACAGCAGCTTCGTCAAAGTTGGCCGAGTGCCAAGAAACCATCCTAAATCTTGGAAAAGAGCTGAAAGCACTGTCTTTGCCAAGGGAAGCAGCATTGTCGGAGAAGGCGTTTTCTACCACAAACCCTTATACCAATGCCATTAATCGGAAGAACCTGATCAAACGCTCTTCGCTCCGAGATCAGATGCTGGCTGAGGATGATGCTAAAATGGTGATTCTAAAGGCTAAAGAAGCTAATACCTCGGCGGGAACAAAAATCCCTTCTGTTCTAGCTAATAATTCCAATGCCTTGTCTCTTATAACTGACATAAAATATAATGAAGCTGATTTTGGTTCAAGGAATAAAGGCAGGGCAGCTGGGACAGTAGCTGTGGTATCAAGTAGAAGACCAGGAGGGTTTAGTTTGCTGCAGAAATTACTCCTCAGAAGAAAGAAATCGAGCGGCAAGAGAAGTTGGTCGGTGGCCAAGACATGA 2055 40.54 MDASINDSVLEKLRTYEKSQEKLEDLLKESSRQVGNLAIENSNLSKALLVKDKMIDDLQKLKTRVDAELNVLISRLDSTEKENSFVKYEFRMLEKELEVRNEELEYNRLFVDESCKQRLENEKKMTVLEAECQRLRLLMQKRLPSSAALSNMKTEVDLLGRGRAETRRNKKNPSRDLIARDNNAETFVQIPSKQIDIIVEQLQRMEEENKSLKEIITNKTFELHSSRIMHSRTASRLSQMEKRLGELSNDKKAIDLAICSSTSKDGLSSSRDNAVVSVFRNVGSEKLNNFPEAKALDFSDMSLMDDFVEMERLALVSVETPRRSGHDHDDKTGKELVPVSVDPSSCDIKREIHSKEVEIGNPFDWLQVVLNAMSEQKRISNRSMEDIFRDIKIALGYVNHLDFEDVEKTAVSFTAASNFEIKVSQNVQSKSNIHKSVSKIIELVEGICSSSHNYQDNLAERNQTSLGDYFIHVFRWNKSELNATLRGFSRVCDDLLNGKTDFEKFAEELRFTLDWILENYKRVGWEITAASSKLAECQETILNLGKELKALSLPREAALSEKAFSTTNPYTNAINRKNLIKRSSLRDQMLAEDDAKMVILKAKEANTSAGTKIPSVLANNSNALSLITDIKYNEADFGSRNKGRAAGTVAVVSSRRPGGFSLLQKLLLRRKKSSGKRSWSVAKT 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3983352 3986069 + Bma016793.1 Bma03g00512 79185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00512 684 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 4 519 - -
Bma03g00512 684 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 521 678 - -
Bma03g00512 684 MobiDBLite consensus disorder prediction 161 180 - -
Bma03g00512 684 Coils Coil 195 222 - -
Bma03g00512 684 Coils Coil 6 33 - -
Bma03g00512 684 Pfam Filament-like plant protein, long coiled-coil 522 558 IPR008587 -
Bma03g00512 684 Pfam Filament-like plant protein, long coiled-coil 3 519 IPR008587 -
Bma03g00512 684 MobiDBLite consensus disorder prediction 161 178 - -
Bma03g00512 684 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 4 519 - -
Bma03g00512 684 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 521 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00512 - - - pmum:103335249 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02360 Bma-Chr1:81300545 Bma03g00512 Bma-Chr3:3983352 3.95E-30 dispersed
Bma03g00512 Bma-Chr3:3983352 Bma04g00240 Bma-Chr4:2070644 1.38E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1122 . . Lsi10g00525 . . . Blo04g00480 . . Bda14g00510 Bpe15g00902 . Bma03g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003264 2 4 2 1 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 3 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00512 Bma_Chr03 FPKM 6.766849 4.360955 1.120879 0.971923 2.642573 1.825786 2.223306 0.0 0.0 0.0