Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00514 ATGGCGGCTGCAACCCAGTCCGTGCAGTGCTTTGGCCGGAAGAAGACGGCGGTGGCGGTGACCCACTGCAAGCGTGGTCGGGGACTGATTAAGATTAATGGATGCCCGATCGAGCTTGTTGAGCCGGAGATTCTTCGGTTCAAGGCTATGGAGCCGATCTACCTTCTCGGGAGACACAATTTTTCAGAGGTTGATATGCGTATTAGGGTGAAGGGAGGAGGCCACACCTCGCAGATCTACGCTATTCGTCAGAGCATCGCCAAGGCTCTCGTAGCTTACTACCAGAAGTACGTGGACGAACAAAAGAAGAAGGAGATCAAGGACATCCTCGTCAGGTATGATAGGACATTGCTAGTCGCTGATCCTAGACGCTGCGAGCCGAAGAAGTTTGGTGGGCGTGGTGCTCGCGCTAGATTCCAGAAATCTTATCGTTGA 435 53.1 MAAATQSVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAMEPIYLLGRHNFSEVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQKKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3990286 3990720 + Bma016795.1 Bma03g00514 79187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00514 144 Pfam Ribosomal protein S9/S16 12 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
Bma03g00514 144 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 144 IPR020568 -
Bma03g00514 144 Gene3D - 1 144 IPR014721 -
Bma03g00514 144 PANTHER 30S RIBOSOMAL PROTEIN S9P 1 144 - -
Bma03g00514 144 ProSitePatterns Ribosomal protein S9 signature. 72 90 IPR020574 GO:0003735|GO:0005840|GO:0006412
Bma03g00514 144 PANTHER RIBOSOMAL PROTEIN S9 1 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00514 Bma12g00434 CCT
Bma03g00514 Bma08g00805 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00514 Bma-Chr3:3990286 Bma12g00434 Bma-Chr12:10893670 8.70E-97 dispersed
Bma03g00514 Bma-Chr3:3990286 Bma05g00509 Bma-Chr5:23550578 4.15E-99 transposed
Bma03g00514 Bma-Chr3:3990286 Bma08g00805 Bma-Chr8:45649075 6.41E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00514 K02960 - ming:122057169 273.092