Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00528 ATGCATGCATTGAACAGGGCTCTAGAACAAGATGTTCAGTCTCTAAAAGATGAAGTTTGTTCAAATGATGGACTAAGAGTTGAACTTAATGAAATAACAGAAATGAAGGTGAGCCTATTGAATCAGGTTGAATTGCTTGAGGCTGAATATAGAAATTTACAGAAAGATAAGGAAACCAAGGAAGAAGACTTGCAAAGAGAGTTATGGATGCTTGAAAACGCTACGAACAATTTTCAAAGTTTGTTGGATGCCAAAGATGCAGAGTTGTGCAAACTAAGCTGTTTGGAGAAAGAGAAAGAATCACTAAACTGCGACCTGAGAGACTTAGCAACACAAAATTCTGTACTGCTTCAACATCTTGAGACAAATAAATCAGATATTGAGTCATCTCTAGCACGTGTGCATGCTTATGACAGAGAAAACCAGAGGTTACAAGATGAAGTTTCTTCTTTGCAAACATGCATATCAAAATTAGAAAGGGATCTGGAAGTAAAAAGTGCTGAATTGCTTGAGCTACAAAGTTCTCATTCTGCTATTATGGCCAGTGTTAGTAGTGCCAATAGATTGAAGGAAGAGAATGATTGCTTGAAAAATGAAGTTGAGTCTTACAAGAAGAGTCATCAAGAATTTCTAAAAAATTCTAGCTTGAACATTATAAAGAGTATTGATTCTGTGGAAATGAAAAGTTGTTATGGTATTGAAAAATGCGGGACAACTATTTCAGATGAAATATCTCAAGAGATGTTTGAAAATGTGGATAGATTATCCACATTCATTGTAGAATTTGAGGGCTTGGAGTTCCATGCCAAGGAAGTTATTCATGAAAATTTGACTCTACAAGCTGACTTGTTAAGGAAGGATGAAGTTCTTAAAGGATTGTTATTTGATCTTAGCTTGTTGCAGGAAACTGCATCAAATAATAAGGATAAAAAAGATGAATTTGAAGAAATTGTGGCTTTGATGGAGGCTTTAGATGATGAGCTTGCAGTAAAATCAACTCAGCTAGATGAAGCCATCTCCCATGGTCATATTCTTGAAGCAGAGCTACTACAAAAAAAAGATGTAGTTACTGCTTTGGAGCTGGATATCTCAAATGAGCGTGAGTCTGTCAAGTTTTTTTCCTATCAAATTACGGATCTGCGAGCTAATATAGACAATGTCCTGGAAGAAAAAAATGCTATTGAGCAGGAGTTAACTGACAGAAAGAAGATTATTGAGGACATGGAAATAGAACTGCTGGAAATGCGCAATGCGCTTGGCCAAATGAATAATTTGGTTGAGTCAATGGCAAACCGTTTAAATCAAGTTGGCAGTGAGAGGGATACGTTTCAAGTGGAAATGCTCTGTTTGAAGGAAAAACTAGAAACAACAGAAGCACGAGCTGCCGAATTTGAGGGTAGTTTGATGGAAGCACAACAGACTTCTGAATCAAGAAAAATATATGCTGAAGAAAAGATAGCAGAAGTAAAGCTATTAGAGAGGTCTGTGGAAGAGCTAGAACGCACAATCAATGTGTTGGAGAACAAGGTTGATATAATTAAAGAAGAAGCTGAACGACAAGGCTTGCAGAGGGAAGAGCTTGAGTTGGAACTTCATTCTGTGAAGTACAAAATGCATAATTTCGAAGATGCTGATACTAATATGAAAAGGGATCTAGATGAGAAAGATAGAGAACTTCAAGAAACACTTCAACGCTACACAATTGTTGAGCATGACATAGCTGAAAAAAATTCTGAGATCGCAAAGCTAAAAGCACACATATCAGAGCTAAATTTACATGCAGAATCACAGGCGAATGAGTACAAGCAAAAATACAAGGCATTGGAATCCATGGCTGAACAAGTCAGAGCTGAAGGCCATTCTACACATGTCGTAAATTCTTTGTCAAATAAGTCAGAAAAGCACCCAATGAAGCCTAGAGGTTCTGGATCCCCTTTTAAATGCATCGGGTTAGGTCTAACACAACAAATGAAATCGGAGAAGGATGAAGAACTTACTGCTGCGAGGCTTCATATTGAAGAACTTGAATCCTTAGCAATCAATAGACAAAAAGAGATCTTCACGCTTAATTCCAGACTAGCTGCTGCAGAAAGTATGACCCATGATGTAATACGTGACTTGCTTGGGCTCAAGTTGGATATGACGAATTGTGTGTCACTGTTAGATAATCAACAAGTCCAGAAGATAGCAGAGAGAGCTCGACATAATGATTTAGAAAATGAGGAAAAGGAGCAGGATGTCGTCAAGCTGAAGAAACAGATTAACGATTTTATTGAGGAGAGGGGAGGGTGGTCAGAAGAAATCGATAGGAAACAGACTGAAATGATCTCATTGCAAGTAGCTTTTGAAAAACTGAAGCAGAGAGATCAGTTACTAAAAACTGAAAATGAAATGTTGAAGATGGAAAGCACAAATTACAGGACAAGGATGACAGAACTTGAAGAACAAGTAAAGAAGCTGTCTGGTCAGCAAAATCTCCAGCAGCGAATTCACCATCATGCCAAGATCAAGGAAGAAAATAATATACTAAAAATACAAAACGAAGACCTTACTGCCAAGCTGCATCACACAGAAGTTCATTTTTCACGCGTCAAGGAAGAGCTTTCTCACTTTAAGTCCAAGGTTTCCAATGAAAGAATAAGACAGTGTCAACTGATTCCGCAATCTTCATCGGCAAATTCGAGGACAGACGATCACCTCCAATCACCAAAATTAGATCATAGAGCTCCTTATTTCTCGGTTTTGGATCGATAA 2754 37.8 MHALNRALEQDVQSLKDEVCSNDGLRVELNEITEMKVSLLNQVELLEAEYRNLQKDKETKEEDLQRELWMLENATNNFQSLLDAKDAELCKLSCLEKEKESLNCDLRDLATQNSVLLQHLETNKSDIESSLARVHAYDRENQRLQDEVSSLQTCISKLERDLEVKSAELLELQSSHSAIMASVSSANRLKEENDCLKNEVESYKKSHQEFLKNSSLNIIKSIDSVEMKSCYGIEKCGTTISDEISQEMFENVDRLSTFIVEFEGLEFHAKEVIHENLTLQADLLRKDEVLKGLLFDLSLLQETASNNKDKKDEFEEIVALMEALDDELAVKSTQLDEAISHGHILEAELLQKKDVVTALELDISNERESVKFFSYQITDLRANIDNVLEEKNAIEQELTDRKKIIEDMEIELLEMRNALGQMNNLVESMANRLNQVGSERDTFQVEMLCLKEKLETTEARAAEFEGSLMEAQQTSESRKIYAEEKIAEVKLLERSVEELERTINVLENKVDIIKEEAERQGLQREELELELHSVKYKMHNFEDADTNMKRDLDEKDRELQETLQRYTIVEHDIAEKNSEIAKLKAHISELNLHAESQANEYKQKYKALESMAEQVRAEGHSTHVVNSLSNKSEKHPMKPRGSGSPFKCIGLGLTQQMKSEKDEELTAARLHIEELESLAINRQKEIFTLNSRLAAAESMTHDVIRDLLGLKLDMTNCVSLLDNQQVQKIAERARHNDLENEEKEQDVVKLKKQINDFIEERGGWSEEIDRKQTEMISLQVAFEKLKQRDQLLKTENEMLKMESTNYRTRMTELEEQVKKLSGQQNLQQRIHHHAKIKEENNILKIQNEDLTAKLHHTEVHFSRVKEELSHFKSKVSNERIRQCQLIPQSSSANSRTDDHLQSPKLDHRAPYFSVLDR 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4096590 4100688 - Bma016811.1 Bma03g00528 79201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00528 917 Coils Coil 127 175 - -
Bma03g00528 917 MobiDBLite consensus disorder prediction 887 917 - -
Bma03g00528 917 MobiDBLite consensus disorder prediction 899 917 - -
Bma03g00528 917 Coils Coil 307 327 - -
Bma03g00528 917 Coils Coil 186 213 - -
Bma03g00528 917 Coils Coil 454 474 - -
Bma03g00528 917 Coils Coil 92 112 - -
Bma03g00528 917 MobiDBLite consensus disorder prediction 623 646 - -
Bma03g00528 917 PANTHER KINESIN-LIKE PROTEIN KIN-12F ISOFORM X1 248 874 - -
Bma03g00528 917 Coils Coil 573 618 - -
Bma03g00528 917 Coils Coil 768 823 - -
Bma03g00528 917 Coils Coil 482 544 - -
Bma03g00528 917 Coils Coil 29 63 - -
Bma03g00528 917 SUPERFAMILY Tropomyosin 428 611 - -
Bma03g00528 917 PANTHER KINESIN-LIKE PROTEIN KIF11 248 874 - -
Bma03g00528 917 Coils Coil 721 760 - -
Bma03g00528 917 Coils Coil 658 678 - -
Bma03g00528 917 Coils Coil 833 853 - -
Bma03g00528 917 Coils Coil 377 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00528 K10400 KIF15; kinesin family member 15 - qsu:111991852 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00528 Bma-Chr3:4096590 Bma05g00987 Bma-Chr5:48362815 7.73E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g473 . . . . . . . . . . Cma02g00434 . Car02g00289 . . . . . . . . . . . . . . . . . . Cone12ag1117 . . . Lsi10g00317 . Chy11g00430 . Blo04g00495 . . Bda14g00526 Bpe15g00887 . Bma03g00528 . . Cmo02g00437 . . . . . . Cpe05g01228 Bhi10g02067 . . . . . . Cla09g01723 Cam09g1818 Cec09g1879 Cco09g1971 . . Cre01g0688 . Csa02g01206 . Cme11g00502
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010311 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00528 Bma_Chr03 FPKM 0.524044 1.017749 8.661751 6.910199 5.368558 5.589355 4.862947 0.0 0.0 0.0