Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00530 ATGCCGCGACCGTATTTCTACAAGCTTGTTCTTTCTTCAACCATCCAAGCCAAACAACTGAGAATTCCAGATAATTTCGTGCGGAAGATTCGAGATGAGCTTTCTGCAGTTGCTACGCTTGCTGTTCCGGTTGGTCACGTATGGCATGTAGGACTAAGAAAAGCAGATAACAAGTTTTGGTTTAGAGAAGGGTGGCAGGAATTTGTTGACCATTATGCGATACGTGTTGGTTACTTTTTGCTATTCAAATACGAAGGGAATTCTTCTTTTGTTGTTTACATATTCAATCTAAGTACGTCTGAAATTAATTATCAATCTGCCAATCTCAGAAATAGTCAAGCGTTCAAGTATTGCAATCAAAATGCTGTATTTGAAGAAATTGAAGATGATGACTCAGGTGACATTGCGGGTTCTTCACTTCCGAGCTTGATTTCTGAAAGAAACAAAGCGTTTAGCGAAGGTTCAGATCAACTGAGATCTTCCAAAAATTTTAATCCTCCAGCACTGCAGAATTTGTTTAATGGTTCAAAGCTGAATTGTATAAATTGGTCTGACGAAGGTAGCGCGCATCCATCAAAAGAGGGCCGTAATTTGATGACCGATATTCAATCTATACGAAATAGTGGGGTTCTAATTAGTCATTCCGAGTCCAAAAAAATTGTGGACGGCGTGAAACAGGAGATGGTGGACGAGGATGTACAAAAACTAAAAAATGTTGGAAGGAAGAAGAGGAAAATGGATGGTAATGAGCAGGGGCCATCCATTCAAAATGAGGAGGAAGTTGAAATCCGATATAGGTTTTATGAAAGTGCTTCTGCCAGAAAGCGGACTGTGACTGCCGAAGAAAGAGAAAGGGTCGTCAGTGCATCCAAAGCTTATGAGCCTATTAATCCCTTTTGTCGAGTTGTTTTGCGACCATCCTATCTATATCGAGGTTGTATAATGTACTTGCCATCTTGCTTTGCCGAAAAGAATCTAAGCATGGTTTCAGGATTCATCAAACTTCAGATTTCTGATGGACGACAGTGGCCCGTCAGATGTCTTAACAAAGGCGGCAAAACTAAGTTTAGCCAAGGCTGGTATGAATTTTGCTTGGAGAATAATTTAGGAGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTTAAAGTTACCATGTTTCGCGTTATGGAAGACGCCAGATGCGCTAACCCAACTCCGTTGCAGAGCTACAGCCATAGTAAGCTGGTAAGAAATTAA 1254 40.75 MPRPYFYKLVLSSTIQAKQLRIPDNFVRKIRDELSAVATLAVPVGHVWHVGLRKADNKFWFREGWQEFVDHYAIRVGYFLLFKYEGNSSFVVYIFNLSTSEINYQSANLRNSQAFKYCNQNAVFEEIEDDDSGDIAGSSLPSLISERNKAFSEGSDQLRSSKNFNPPALQNLFNGSKLNCINWSDEGSAHPSKEGRNLMTDIQSIRNSGVLISHSESKKIVDGVKQEMVDEDVQKLKNVGRKKRKMDGNEQGPSIQNEEEVEIRYRFYESASARKRTVTAEERERVVSASKAYEPINPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSMVSGFIKLQISDGRQWPVRCLNKGGKTKFSQGWYEFCLENNLGEGDVCVFELIKAREIVLKVTMFRVMEDARCANPTPLQSYSHSKLVRN 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4116072 4118682 + Bma016814.2 Bma03g00530 79203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00530 417 CDD B3_DNA 298 393 IPR003340 GO:0003677
Bma03g00530 417 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 415 - -
Bma03g00530 417 Gene3D - 1 99 IPR015300 -
Bma03g00530 417 SUPERFAMILY DNA-binding pseudobarrel domain 294 393 IPR015300 -
Bma03g00530 417 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Bma03g00530 417 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Bma03g00530 417 PANTHER B3 DOMAIN-CONTAINING 1 415 - -
Bma03g00530 417 Gene3D - 277 397 IPR015300 -
Bma03g00530 417 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Bma03g00530 417 CDD B3_DNA 4 96 IPR003340 GO:0003677
Bma03g00530 417 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Bma03g00530 417 Pfam B3 DNA binding domain 303 393 IPR003340 GO:0003677
Bma03g00530 417 SMART B3_2 6 98 IPR003340 GO:0003677
Bma03g00530 417 SMART B3_2 300 395 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00530 Bma05g00507 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00530 Bma-Chr3:4116072 Bma09g00321 Bma-Chr9:28021948 7.64E-10 dispersed
Bma03g00530 Bma-Chr3:4116072 Bma05g00101 Bma-Chr5:3241179 5.79E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56997 PF02362 B3 3.40E-18 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00530 - - mnt:21409635 562.377