Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00530 | ATGCCGCGACCGTATTTCTACAAGCTTGTTCTTTCTTCAACCATCCAAGCCAAACAACTGAGAATTCCAGATAATTTCGTGCGGAAGATTCGAGATGAGCTTTCTGCAGTTGCTACGCTTGCTGTTCCGGTTGGTCACGTATGGCATGTAGGACTAAGAAAAGCAGATAACAAGTTTTGGTTTAGAGAAGGGTGGCAGGAATTTGTTGACCATTATGCGATACGTGTTGGTTACTTTTTGCTATTCAAATACGAAGGGAATTCTTCTTTTGTTGTTTACATATTCAATCTAAGTACGTCTGAAATTAATTATCAATCTGCCAATCTCAGAAATAGTCAAGCGTTCAAGTATTGCAATCAAAATGCTGTATTTGAAGAAATTGAAGATGATGACTCAGGTGACATTGCGGGTTCTTCACTTCCGAGCTTGATTTCTGAAAGAAACAAAGCGTTTAGCGAAGGTTCAGATCAACTGAGATCTTCCAAAAATTTTAATCCTCCAGCACTGCAGAATTTGTTTAATGGTTCAAAGCTGAATTGTATAAATTGGTCTGACGAAGGTAGCGCGCATCCATCAAAAGAGGGCCGTAATTTGATGACCGATATTCAATCTATACGAAATAGTGGGGTTCTAATTAGTCATTCCGAGTCCAAAAAAATTGTGGACGGCGTGAAACAGGAGATGGTGGACGAGGATGTACAAAAACTAAAAAATGTTGGAAGGAAGAAGAGGAAAATGGATGGTAATGAGCAGGGGCCATCCATTCAAAATGAGGAGGAAGTTGAAATCCGATATAGGTTTTATGAAAGTGCTTCTGCCAGAAAGCGGACTGTGACTGCCGAAGAAAGAGAAAGGGTCGTCAGTGCATCCAAAGCTTATGAGCCTATTAATCCCTTTTGTCGAGTTGTTTTGCGACCATCCTATCTATATCGAGGTTGTATAATGTACTTGCCATCTTGCTTTGCCGAAAAGAATCTAAGCATGGTTTCAGGATTCATCAAACTTCAGATTTCTGATGGACGACAGTGGCCCGTCAGATGTCTTAACAAAGGCGGCAAAACTAAGTTTAGCCAAGGCTGGTATGAATTTTGCTTGGAGAATAATTTAGGAGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTTAAAGTTACCATGTTTCGCGTTATGGAAGACGCCAGATGCGCTAACCCAACTCCGTTGCAGAGCTACAGCCATAGTAAGCTGGTAAGAAATTAA | 1254 | 40.75 | MPRPYFYKLVLSSTIQAKQLRIPDNFVRKIRDELSAVATLAVPVGHVWHVGLRKADNKFWFREGWQEFVDHYAIRVGYFLLFKYEGNSSFVVYIFNLSTSEINYQSANLRNSQAFKYCNQNAVFEEIEDDDSGDIAGSSLPSLISERNKAFSEGSDQLRSSKNFNPPALQNLFNGSKLNCINWSDEGSAHPSKEGRNLMTDIQSIRNSGVLISHSESKKIVDGVKQEMVDEDVQKLKNVGRKKRKMDGNEQGPSIQNEEEVEIRYRFYESASARKRTVTAEERERVVSASKAYEPINPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSMVSGFIKLQISDGRQWPVRCLNKGGKTKFSQGWYEFCLENNLGEGDVCVFELIKAREIVLKVTMFRVMEDARCANPTPLQSYSHSKLVRN | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4116072 | 4118682 | + | Bma016814.2 | Bma03g00530 | 79203 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00530 | 417 | CDD | B3_DNA | 298 | 393 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 1 | 415 | - | - | |
Bma03g00530 | 417 | Gene3D | - | 1 | 99 | IPR015300 | - | |
Bma03g00530 | 417 | SUPERFAMILY | DNA-binding pseudobarrel domain | 294 | 393 | IPR015300 | - | |
Bma03g00530 | 417 | ProSiteProfiles | B3 DNA-binding domain profile. | 300 | 395 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | SUPERFAMILY | DNA-binding pseudobarrel domain | 3 | 97 | IPR015300 | - | |
Bma03g00530 | 417 | PANTHER | B3 DOMAIN-CONTAINING | 1 | 415 | - | - | |
Bma03g00530 | 417 | Gene3D | - | 277 | 397 | IPR015300 | - | |
Bma03g00530 | 417 | ProSiteProfiles | B3 DNA-binding domain profile. | 5 | 98 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | CDD | B3_DNA | 4 | 96 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | Pfam | B3 DNA binding domain | 9 | 96 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | Pfam | B3 DNA binding domain | 303 | 393 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | SMART | B3_2 | 6 | 98 | IPR003340 | GO:0003677 | |
Bma03g00530 | 417 | SMART | B3_2 | 300 | 395 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma03g00530 | Bma05g00507 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00530 | Bma-Chr3:4116072 | Bma09g00321 | Bma-Chr9:28021948 | 7.64E-10 | dispersed | |
Bma03g00530 | Bma-Chr3:4116072 | Bma05g00101 | Bma-Chr5:3241179 | 5.79E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56997 | PF02362 | B3 | 3.40E-18 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00530 | - | - | mnt:21409635 | 562.377 |