Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00535 ATGGAGGGTTGCTCTCTTCGTTCATCAGCTTTATCCACTTTACCATCCTCCTCATGTCCAAGTGGGTTTCTGCATAACTCATTGCTACATGTTCAGGCTATTAGAATTTCCACTTTGAAAACACCCCCACATTCCGGGAGGATCAATTTTCTACGTATTAGAGCCCAAACTTCTGGTACAAAACAGTCCAGCTCAGAGGCGTTCTCAAAGAGAGCAGATTTGCTGGACAGTGATCTCGCTTTCGTTGCTGGGGCCACTGGCAAAGTTGGCTCACGAACTGTAAGGTCACTTTTGAAACTCGGGTTTCGAGTAAGAGCTGGAGTAAGAAGTACTCAGAAGGCAGAGAATCTTGTTCAAAGTGTGAGGCAAATGACGCTCGACAGTGCTGTAGAAAGGCTTGAAATTGTGAAATGTGACTTGGAGAAACAAGATCAAATTGGGACAGCAATTGGCAATGCGTCCGTGGTTATTTGCTGTATTGGAGCAAGTGAGAAGGAGATTTTTGATATTACTGGTCCTTATAGGATTGACTATCTGGCTACCAAAAATCTGATTGTAGCAGCATCTGCTGCCAAAGTCGGTCACTTTATTTTGCTTACGTCCCTGGGCACTAACAAGTTTGGATTTCCTGCTGCTATTCTCAATTTGTTTTGGGGAGTCCTCATCTGGAAAAGGAAGGCAGAAGAAGCATTGTTAGCTAGTGGGCTCCCTTATACCATAGTGAGACCTGGAGGCATGGAGCGGCCAACCGATGCTTTCAAGGAGACTCATAATCTTACTCTCTCACGGGGAGATACTTTATTTGGTGGTCTGGTGTCAAACCTTCAGGTGGCAGAGCTCATGGCATTCATGGCCAAAAATCCTGGTCTTTCATACTATAAAGTAGTTGAAGTAGTTGCAGAGACTACTGCGCCAAAGACTCCCATGGAGGAACTTCTTGGGAATATTCCATCTCGAGATGGCGTTTCTGTTGTCAAGGTTTGTTCTTTTCTTTGGTTTACAAGGCAAGAATCAAAACGATAG 1023 44.57 MEGCSLRSSALSTLPSSSCPSGFLHNSLLHVQAIRISTLKTPPHSGRINFLRIRAQTSGTKQSSSEAFSKRADLLDSDLAFVAGATGKVGSRTVRSLLKLGFRVRAGVRSTQKAENLVQSVRQMTLDSAVERLEIVKCDLEKQDQIGTAIGNASVVICCIGASEKEIFDITGPYRIDYLATKNLIVAASAAKVGHFILLTSLGTNKFGFPAAILNLFWGVLIWKRKAEEALLASGLPYTIVRPGGMERPTDAFKETHNLTLSRGDTLFGGLVSNLQVAELMAFMAKNPGLSYYKVVEVVAETTAPKTPMEELLGNIPSRDGVSVVKVCSFLWFTRQESKR 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4156325 4162441 - Bma016818.1 Bma03g00535 79208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00535 340 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 320 IPR044719 -
Bma03g00535 340 Gene3D - 78 319 - -
Bma03g00535 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 312 IPR036291 -
Bma03g00535 340 CDD SDR_a5 81 302 - -
Bma03g00535 340 Pfam NAD(P)H-binding 84 288 IPR016040 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00535 - - - qsu:112030406 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00877 Bma-Chr2:46982215 Bma03g00535 Bma-Chr3:4156325 3.02E-10 dispersed
Bma03g00535 Bma-Chr3:4156325 Bma07g00803 Bma-Chr7:24681704 5.34E-38 dispersed
Bma03g00535 Bma-Chr3:4156325 Bma01g01862 Bma-Chr1:68233856 7.96E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00535 Bma_Chr03 FPKM 23.271446 22.338125 15.294679 15.840375 17.75951 17.675161 17.658081 13.305983 13.000658 13.512152