Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00547 ATGGAGGAGATGCACGGCGACGCCGGAACCCTATCCTTCTCCGGCGTAGAATCTCCCTCGTTGGAGCCGGCATCGTCGCGTCGCCGCGCAGGAGCTCAGAAGCGGAAAGCCAGCAGCCTAGGGCTATCGAATAGCTTGACCACGCCTTCAAAACGCATCACCAGAGCTCGCCAGGTCCCCGGCAACCTAGCTGCTACCGCCTCGGATTTTTCGGCCGGAGGAGTGGCTGCCCCTGCCAGCTCAGTGAAGGCGGAGATCACGACTAGTCAGGGAGTTCCTCGGGCAGAAGCGGTGTTGTCGCCGACTGTCGCTGAGAAATTGAACAAAGAGAGTAAATTGGAGGCTCTGGAGGCTTCGTTCGAAGCTAAGTTTGAAGCTGTTAGATCGCGTGGTGCCAATGCTCACGTGGTTCCAAATCATTGCGGTTGGTTTTCATGGAATCACATACATCCTATAGAGGAGCGCACACTGCCTACTTTTTTCGATTCTAAAACTGAGACTCGAACTCCAGATATTTATACGGAGATACGCAATTGGATTTTGAAGAAATTCCATACAAATCCAAATGTACAAATAGAATTGGAGGATTTGTCGGAGCTTGAATCTCGAGACTCGGATGCGAAACAAGAGGTAATGGAGTTTTTAGATCACTGGGGTCTGATTAATTTCCACCCATATCTACCCAGTGCAGAAAGTTCTTCTCCTACCAACACTATTGAAGATAAGTTGCCAAATGACCCATTGATCGAAAAGTTATATCGCTTTGAAACATTGGAATCTTGTTCATCAATACCTCCAAAGACTACTATTGCTCCAGCATTGCCATCTGGATTGTTTCCAGAAAAAACAATTGCCGAAGATTTAATGAAACCCGAGGTCCCAGCTTACCATTGCAACTCCTGTTCAGCTGATTGCTCTCGCAAGCGTTACCATTGTCAGAAGCAGGCAGATTTTGATTTATGCACGGAGTGCTTTAACAATGGGAAATTTGACTCTGACATGTCTTCATCGGATTTTATTCTCATGGAGCCTGCTGAGGTTCATGGGGTGAGTGGCGGAAAGTGGACAGATCAGGAGACTCTCCTCCTCCTTGAAGCTTTAGAACTTTATAAAGAAAACTGGAATGAGATTGCTGAGCATGTTGCAACAAAAACAAAGGCTCAATGTATACTGCATTTTCTTCAAATGCCAATTGAGGACACCTTTCTTGATTTCAACGAGGATTTAGATTCTATTTCCAAAAAACCTGAGGTTCCACCTTCAAAAGAAAATGATTTGGCAATCCTTGAAGATGCTGCTGAAGTAACTGATGGTAAAATTGGTGTTAAGGAGGAGCAGCCTCCAACTTCCCACATTGAAGCTGCCAAGAAAGAAGATGCTGGTGAAAGTAACATGAAAAATTCAAAAGTAGAAGAAGGGAGGGAAATGAAAGATGCCCTAGGAAGTTCAAAATCTGAAAATGGTCACCTGGAGATTAGTGAAAGTGAAAACTGTGCGTTGAAGGCTCTAAAAGAAGCTTTTGAAGCCATTGGATCTCTTTCAATACCTGAATGCTCGTTTTCATTTACTGATGTAGGGAACCCTGTTATGGCATTGGCGGCATTCCTAGCTAGATTAGTTGGCCCAGAAATTGCTAGTGCATCAGCCCATAATTCTTTAAAAGCCATATCTGGAAGTTCTCCCAGCATGGAACTGGCTGCAAGATATTGCTTCTTTTTGGAAGACCCGCCTGATAGCAAGGAAGAATGCAGTGGGAGTAATGGCGGGACTAGACCGAATGATGAAAGTCAACATGCGGAGCAAAACGACAGCACTTTTTTGAACGAACCAAAAAATGCAGAGATATCAAAGGATGACGGTGAGAATTTTATGAAGGGGACGGATCTCAAGTCCATAGTGGGTGTTGAGCCGACTTCTGAGGTGGAAGAAGGAATGTGTAGAAGAGGGTCTTCTAAACCAACTGCAACAACGGATGCAGGTACCGCAGAATTGCTGCCCTTGGAAAAGAATGATCTTCAGGAGCCAGCTACATTTAATTGTGTTGATGAGACTGCCCATTCAATGAAGGACGGGGAAACGAAACTGGATCCAGTGCCCTTATCAAAAAATGGACCTTTGCAACCTGTTGTAACTAGTCCATCTGGACGGGATATGGAACCTAGAGTAGCGCAAAAAGATGCTGACAGTGTGCCGGAATTTGGCATCTTGTTTGATAAAAAAGGCGCGACTTGGCAAACTAAAGAAGGCCTATCATGTCTGGCAGCATTACCAGATTATTGTTATCTTACAGGTGAAGTTGAAGTGAGAGTTATTGATAAAGAGGTTGGTGGCTTTAAAGTAAGACGGAATGATGATAAAATTGATAAGTTGAAAAATGCTGCGGTTACTGCACTATCAGCCGCAACTGTAAAAGCAAGACTTCTGGCAAAGGAGGAAGAGGAACAAATCCGACAGCTTGCTGCCTTCTTGATAGAAAAGCAGGTAATTTCATTAAAACTGGCTCTTATAGTTGTTGATCTCGACTTTTTAAGAGAATTAATTTTATTGCAGTTACATAAGTTGGAATCCAAGTTGGCTTTTTTTGATGAGATGGATAACGTCATAGTAAGGGTGAGAGAGCAATTAGATCGGTCAAAGCAGAGGCTATACCAGGAGCGTGCACAGATAATTGCTGCACGACTTGGTTTACCAGCTTCCTCTGGAAAAATAATTCCTCCAGGGTTACCTACTGGTAGATTCGGTACGACCATGGGAAACTCAGTTCCAAGGCCTCCATCGACTATGACTTCCCAAAGGCCACCTATATCTAGATCCATGGGTACGGTGTCTTCTTCAAGCTTATTTGTATCTTCTACAGTTGCAGGAAATTCTTTTAGGCCATCTACTTAG 2889 44.24 MEEMHGDAGTLSFSGVESPSLEPASSRRRAGAQKRKASSLGLSNSLTTPSKRITRARQVPGNLAATASDFSAGGVAAPASSVKAEITTSQGVPRAEAVLSPTVAEKLNKESKLEALEASFEAKFEAVRSRGANAHVVPNHCGWFSWNHIHPIEERTLPTFFDSKTETRTPDIYTEIRNWILKKFHTNPNVQIELEDLSELESRDSDAKQEVMEFLDHWGLINFHPYLPSAESSSPTNTIEDKLPNDPLIEKLYRFETLESCSSIPPKTTIAPALPSGLFPEKTIAEDLMKPEVPAYHCNSCSADCSRKRYHCQKQADFDLCTECFNNGKFDSDMSSSDFILMEPAEVHGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFLQMPIEDTFLDFNEDLDSISKKPEVPPSKENDLAILEDAAEVTDGKIGVKEEQPPTSHIEAAKKEDAGESNMKNSKVEEGREMKDALGSSKSENGHLEISESENCALKALKEAFEAIGSLSIPECSFSFTDVGNPVMALAAFLARLVGPEIASASAHNSLKAISGSSPSMELAARYCFFLEDPPDSKEECSGSNGGTRPNDESQHAEQNDSTFLNEPKNAEISKDDGENFMKGTDLKSIVGVEPTSEVEEGMCRRGSSKPTATTDAGTAELLPLEKNDLQEPATFNCVDETAHSMKDGETKLDPVPLSKNGPLQPVVTSPSGRDMEPRVAQKDADSVPEFGILFDKKGATWQTKEGLSCLAALPDYCYLTGEVEVRVIDKEVGGFKVRRNDDKIDKLKNAAVTALSAATVKARLLAKEEEEQIRQLAAFLIEKQVISLKLALIVVDLDFLRELILLQLHKLESKLAFFDEMDNVIVRVREQLDRSKQRLYQERAQIIAARLGLPASSGKIIPPGLPTGRFGTTMGNSVPRPPSTMTSQRPPISRSMGTVSSSSLFVSSTVAGNSFRPST 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4497182 4502234 + Bma016833.2 Bma03g00547 79220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00547 962 SMART zz_5 292 336 IPR000433 GO:0008270
Bma03g00547 962 MobiDBLite consensus disorder prediction 583 611 - -
Bma03g00547 962 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 34 834 - -
Bma03g00547 962 Gene3D - 350 401 - -
Bma03g00547 962 MobiDBLite consensus disorder prediction 437 490 - -
Bma03g00547 962 MobiDBLite consensus disorder prediction 578 625 - -
Bma03g00547 962 MobiDBLite consensus disorder prediction 916 943 - -
Bma03g00547 962 Pfam SWIRM domain 138 223 IPR007526 GO:0005515
Bma03g00547 962 MobiDBLite consensus disorder prediction 37 55 - -
Bma03g00547 962 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 846 937 - -
Bma03g00547 962 ProSiteProfiles Myb-like domain profile. 353 397 IPR001005 -
Bma03g00547 962 Pfam Zinc finger, ZZ type 295 330 IPR000433 GO:0008270
Bma03g00547 962 CDD ZZ_RSC8 296 340 IPR041984 -
Bma03g00547 962 Gene3D - 293 341 IPR043145 -
Bma03g00547 962 MobiDBLite consensus disorder prediction 637 657 - -
Bma03g00547 962 PANTHER SWI/SNF COMPLEX-RELATED 846 937 - -
Bma03g00547 962 ProSitePatterns Zinc finger ZZ-type signature. 298 324 IPR000433 GO:0008270
Bma03g00547 962 SUPERFAMILY Homeodomain-like 350 402 IPR009057 -
Bma03g00547 962 ProSiteProfiles SWIRM domain profile. 135 232 IPR007526 GO:0005515
Bma03g00547 962 ProSiteProfiles SANT domain profile. 350 401 IPR017884 -
Bma03g00547 962 Gene3D - 141 226 IPR036388 -
Bma03g00547 962 MobiDBLite consensus disorder prediction 695 725 - -
Bma03g00547 962 SMART sant 351 399 IPR001005 -
Bma03g00547 962 SUPERFAMILY RING/U-box 291 344 - -
Bma03g00547 962 CDD SANT 371 396 IPR001005 -
Bma03g00547 962 ProSiteProfiles Zinc finger ZZ-type profile. 293 347 IPR000433 GO:0008270
Bma03g00547 962 Pfam Myb-like DNA-binding domain 353 395 IPR001005 -
Bma03g00547 962 MobiDBLite consensus disorder prediction 1 58 - -
Bma03g00547 962 Pfam SWIRM-associated region 1 844 896 IPR032451 -
Bma03g00547 962 SUPERFAMILY Homeodomain-like 142 224 IPR009057 -
Bma03g00547 962 MobiDBLite consensus disorder prediction 437 484 - -
Bma03g00547 962 PANTHER SWI/SNF COMPLEX-RELATED 34 834 - -
Bma03g00547 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 353 401 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00547 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - jre:109003292 859.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00547 Bma-Chr3:4497182 Bma04g00014 Bma-Chr4:208568 1.24E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00547 Bma_Chr03 FPKM 0.24228 0.0 0.940588 0.26365 0.228698 0.261681 0.0 0.891596 1.506249 1.108698