Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00548 ATGTCAGTTGCTGAGCTGAAGAAGCGCCGTGCGGCGGCTATCCAGACAGTGAACGTCCTCAGAGACCGCTTGAAGCAGAGGCGGAACACTTTTCTCGACACTGATGTTTCGGAGTATGCAAGGTCGCAAGGAAAGAATCCTGTCTGTTTCGGACCAACGGATCTAGTGTGCTGCAGAACGTTGCAGGGTCATTCAGGAAAAGTATATTCACTGGACTGGACTCCAGATAGGAATAGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATTGTGTGGAATTCTCTGACCAGCCAAAAGATCCATGCTATAAAACTGCCTTGCCCATGGGTCATGACTTGTTCTTTCTCACCTTCTGGTCGGTCTGTTGCTTGTGGTGGTCTTGATAGTGTTTGCTCAATCATCAACCTGAATTTCCTCACCGATATGGATGGGAATCTACCAGTCGCGAAAGTGCTTAGCGGGCATAAAGGTTATGTTTCGGCCTGTCAATATGTTCCAGATGAGGATACTCACCTCATAACCAGTTCCGGTGACCATACATGTATTTTATGGGATATTACTACGGGACTTAGAACGACTGTCTTTGGAGGTGAATTTCAGTCTGGACACACTGCGGACGTGTTGAGTGTCTCAATTAATGGGTCCAACTCAAGAATTTTCTTATCTGGTTCGTGTGATGGAACTGTGCGATTATGGGACACTCGTGTAGCAAGTCGAGCTGTGCAGACATATTATGGGAACGATGTTGATGTAAATACTGTAAAGTTCTTTCCAGATGGTAACAGATTTGGAACTGGCTCAGATGATGGTACTATCAGATTGTTTGACACCAGGACTGGACACCTACTTCAAGTGTATCATCAACAGCATAGTGATAATCATCCGCCGCCTGTAACCTCCATTGCATTCTCCATATCAGGAAGACTTCTGTTTGCTGGATATACAAATGGTGATTGCTATGTGTGGGATACCCTTTTAGCTAAGATTTGGGATACAGCAGGCCAGGAAAGATTCCAAAGCCTTGGTGTTGCTTTCTACCGAGGTGCTGATTGTTGTGTTCTAGTCTATGATGTTAACTCAATGAAATCATTTGACAACCTTAACAACTGGCGAGAAGAATTCCTCATTCAGGCAAGTCCTTCAGATCCAGAAAATTTTCCTTTTGTTGTTCTTGGAAACAAAGTTGATATAGATGGTGGAAATAGTAGAGTGGTTTCGGAGAAAAAAGCTCGAGCTTGGTGTGCATCAAAAGGAAATATTCCATACTTCGAGACATCAGCTAAAGAAGGCATCAATGTGGAAGAGGCTTTCCAATGCATTGCCAAGAATGCACTCAAAAGCGGGGAAGAGGAAGAGATTTATCTTCCTGATACTATTGACGTGGGAAGCACCAATCAGCCAAGATCAAGTGGGTGTGAATGCTGA 1425 44.14 MSVAELKKRRAAAIQTVNVLRDRLKQRRNTFLDTDVSEYARSQGKNPVCFGPTDLVCCRTLQGHSGKVYSLDWTPDRNRIVSASQDGRLIVWNSLTSQKIHAIKLPCPWVMTCSFSPSGRSVACGGLDSVCSIINLNFLTDMDGNLPVAKVLSGHKGYVSACQYVPDEDTHLITSSGDHTCILWDITTGLRTTVFGGEFQSGHTADVLSVSINGSNSRIFLSGSCDGTVRLWDTRVASRAVQTYYGNDVDVNTVKFFPDGNRFGTGSDDGTIRLFDTRTGHLLQVYHQQHSDNHPPPVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGSTNQPRSSGCEC 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4503480 4511591 - Bma016834.1 Bma03g00548 79221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00548 474 ProSiteProfiles small GTPase Rab1 family profile. 259 474 - -
Bma03g00548 474 Gene3D - 343 445 IPR027417 -
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 323 IPR001680 GO:0005515
Bma03g00548 474 ProSiteProfiles small GTPase Ras family profile. 227 474 IPR001806 GO:0003924|GO:0005525
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Bma03g00548 474 TIGRFAM small_GTP: small GTP-binding protein domain 325 440 IPR005225 GO:0005525
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Bma03g00548 474 SMART ras_sub_4 304 447 - -
Bma03g00548 474 Pfam Ras family 326 445 IPR001806 GO:0003924|GO:0005525
Bma03g00548 474 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 335 IPR016346 GO:0007165
Bma03g00548 474 SMART rho_sub_3 310 447 IPR001806 GO:0003924|GO:0005525
Bma03g00548 474 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Bma03g00548 474 Gene3D - 10 342 IPR015943 GO:0005515
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Bma03g00548 474 SUPERFAMILY WD40 repeat-like 27 324 IPR036322 GO:0005515
Bma03g00548 474 Coils Coil 3 23 - -
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Bma03g00548 474 SMART rab_sub_5 308 447 - -
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Bma03g00548 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 448 IPR027417 -
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Bma03g00548 474 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Bma03g00548 474 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Bma03g00548 474 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Bma03g00548 474 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Bma03g00548 474 SMART WD40_4 279 323 IPR001680 GO:0005515
Bma03g00548 474 SMART WD40_4 192 233 IPR001680 GO:0005515
Bma03g00548 474 SMART WD40_4 237 276 IPR001680 GO:0005515
Bma03g00548 474 SMART WD40_4 96 135 IPR001680 GO:0005515
Bma03g00548 474 SMART WD40_4 145 185 IPR001680 GO:0005515
Bma03g00548 474 SMART WD40_4 54 93 IPR001680 GO:0005515
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Bma03g00548 474 CDD WD40 57 357 - -
Bma03g00548 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Bma03g00548 474 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 335 - -
Bma03g00548 474 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Bma03g00548 474 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Bma03g00548 474 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Bma03g00548 474 Pfam WD domain, G-beta repeat 289 323 IPR001680 GO:0005515
Bma03g00548 474 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Bma03g00548 474 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Bma03g00548 474 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Bma03g00548 474 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00548 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - qsu:112007595 573.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00548 Bma-Chr3:4503480 Bma06g00545 Bma-Chr6:28812547 1.76E-64 dispersed
Bma08g00282 Bma-Chr8:3865463 Bma03g00548 Bma-Chr3:4503480 9.98E-09 dispersed
Bma03g00548 Bma-Chr3:4503480 Bma09g00938 Bma-Chr9:48788128 5.49E-91 transposed
Bma03g00548 Bma-Chr3:4503480 Bma15g00369 Bma-Chr15:3864076 1.73E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00548 Bma_Chr03 FPKM 29.341963 31.005905 148.067062 140.935287 5.297388 5.323983 4.647866 16.888456 17.677357 17.566359