Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00549 | ATGGCGGTTTCTGGTAATCGCTCTGCGGAAGTTCAGGCGTCGGATGATTCCGTCACTCGCACGCTCAATTCGAAAACTACTATTTTTAGCTTAAACCTCTACGTTGTGATCGGAATCATCGCTGCCTGCTTGATCGCCGCTTTCCTTGTGATTTTCTTATGCGTCCGTAAAAGTAAATGTTCGAGGAAGAGTAAAATACGAGTAAAGCACAGCCCGGGTTTACGTCCCCTGGATTCCAATGAGATCCCGGAGATCAAAGCAGTGGATTGCGTTCAGAACTGTGACAAGGTGGGGGCAGGAGCTGAAATTATAAATCCTATGAAAATAATCGACATTGAGACTGGAAGAGAGAAAAAGAGCGAAGAGAGTGATGCGTCTGCCTCCAGTGGAAGCCGTAGTGATGTGTCGGTAGAAACACCAAACATTGGATGGGGGCAATGGTACAGCTTGAAGGAGCTAGAGATAGCAACCTGTGGATTCGTAGAAGAGAACGTGATCGGAGAAGGTGGATATGGAATCGTGTACAAGGGGATTTTTCCGGACGGCTCGGTGGTAGCTGTGAAGAATCTTCTAAACAATAAGGGTCAGGCAGAGAAAGAGTTCAGAGTAGAAGTAGAGGCTATTGGTAAAGTAAGGCATAAAAACTTGGTGGGTTTGATAGGTTATTGTGCCGAAGGTGCTAAGAGGATGCTTGTATATGAATTTGTTGACAACGGAAATTTGGAGCAATGGTTGCACGGAGATGTAGGTTCTGTTAGTCCATTGACATGGGATATTCGGATAAGAATTGCTATTGGGACTGCAAAGGGATTGGCCTATTTGCATGAAGGCTTAGAACCTAAAGTTGTACACCGTGATGTAAAATCCAGTAACATTCTTTTGGATAGAAAGTGGCATCCAAAAGTATCCGACTTTGGACTAGCTAAGCTATTGGGATCTGAGGCAACCCATGTAACTACTCGTGTTATGGGGACCTTTGGTTATGTCTCTCCTGAGTATGCAAGTACAGGAATGCTTAATGAGAGAAGTGATGTGTATAGTTTTGGAGTTTTACTAATGGAAATTATAACCGGAAGAAGTCCGATCGATTATTCCAGACCTGCGGGAGAGATGAACTTGGTCGATTGGTTTAAAGGAATGGTGGCAAATCGACGTGGTGAGGAGGTTGTAGATCCCCTGATTGAGGTTCAGCCCTCACCAAGAGCTTTAAAGCGTGTATTGCTTGTTTGTCTCCGTTGCATAGACATGGATGCTGTTAAGCGGCCAAAAATGGGGCAAATTGTTCATATGCTAGAGGCAGATGACTTTCCATTTCGCACAGAGCTGAGATCTATTAGTGAAAAAGATTATCATCCTTCAAGTGAAGAAGCTACCGCTAGATTAAAATATTCATGGAAACAGGGCGGTGGGGATGGCTTGGAGCGATCAAGATAG | 1434 | 44.42 | MAVSGNRSAEVQASDDSVTRTLNSKTTIFSLNLYVVIGIIAACLIAAFLVIFLCVRKSKCSRKSKIRVKHSPGLRPLDSNEIPEIKAVDCVQNCDKVGAGAEIINPMKIIDIETGREKKSEESDASASSGSRSDVSVETPNIGWGQWYSLKELEIATCGFVEENVIGEGGYGIVYKGIFPDGSVVAVKNLLNNKGQAEKEFRVEVEAIGKVRHKNLVGLIGYCAEGAKRMLVYEFVDNGNLEQWLHGDVGSVSPLTWDIRIRIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWHPKVSDFGLAKLLGSEATHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSRPAGEMNLVDWFKGMVANRRGEEVVDPLIEVQPSPRALKRVLLVCLRCIDMDAVKRPKMGQIVHMLEADDFPFRTELRSISEKDYHPSSEEATARLKYSWKQGGGDGLERSR | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4513517 | 4516657 | - | Bma016835.1 | Bma03g00549 | 79222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00549 | 477 | CDD | STKc_IRAK | 166 | 432 | - | - | |
Bma03g00549 | 477 | MobiDBLite | consensus disorder prediction | 115 | 137 | - | - | |
Bma03g00549 | 477 | SUPERFAMILY | Protein kinase-like (PK-like) | 134 | 432 | IPR011009 | - | |
Bma03g00549 | 477 | Pfam | Protein kinase domain | 161 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma03g00549 | 477 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 235 | - | - | |
Bma03g00549 | 477 | SMART | serkin_6 | 160 | 438 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma03g00549 | 477 | PANTHER | OS01G0323000 PROTEIN | 9 | 448 | - | - | |
Bma03g00549 | 477 | PANTHER | OS03G0227900 PROTEIN | 9 | 448 | - | - | |
Bma03g00549 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 236 | 442 | - | - | |
Bma03g00549 | 477 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 282 | 294 | IPR008271 | GO:0004672|GO:0006468 | |
Bma03g00549 | 477 | ProSitePatterns | Protein kinases ATP-binding region signature. | 166 | 188 | IPR017441 | GO:0005524 | |
Bma03g00549 | 477 | ProSiteProfiles | Protein kinase domain profile. | 160 | 439 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00549 | Bma-Chr3:4513517 | Bma05g00040 | Bma-Chr5:2169428 | 0 | dispersed | |
Bma15g01003 | Bma-Chr15:38971692 | Bma03g00549 | Bma-Chr3:4513517 | 1.14E-93 | dispersed | |
Bma03g00549 | Bma-Chr3:4513517 | Bma15g00184 | Bma-Chr15:1925429 | 2.59E-100 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66394 | PF00069 | Pkinase | 8.10E-45 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00549 | - | - | jre:109011190 | 677.167 |