Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00549 ATGGCGGTTTCTGGTAATCGCTCTGCGGAAGTTCAGGCGTCGGATGATTCCGTCACTCGCACGCTCAATTCGAAAACTACTATTTTTAGCTTAAACCTCTACGTTGTGATCGGAATCATCGCTGCCTGCTTGATCGCCGCTTTCCTTGTGATTTTCTTATGCGTCCGTAAAAGTAAATGTTCGAGGAAGAGTAAAATACGAGTAAAGCACAGCCCGGGTTTACGTCCCCTGGATTCCAATGAGATCCCGGAGATCAAAGCAGTGGATTGCGTTCAGAACTGTGACAAGGTGGGGGCAGGAGCTGAAATTATAAATCCTATGAAAATAATCGACATTGAGACTGGAAGAGAGAAAAAGAGCGAAGAGAGTGATGCGTCTGCCTCCAGTGGAAGCCGTAGTGATGTGTCGGTAGAAACACCAAACATTGGATGGGGGCAATGGTACAGCTTGAAGGAGCTAGAGATAGCAACCTGTGGATTCGTAGAAGAGAACGTGATCGGAGAAGGTGGATATGGAATCGTGTACAAGGGGATTTTTCCGGACGGCTCGGTGGTAGCTGTGAAGAATCTTCTAAACAATAAGGGTCAGGCAGAGAAAGAGTTCAGAGTAGAAGTAGAGGCTATTGGTAAAGTAAGGCATAAAAACTTGGTGGGTTTGATAGGTTATTGTGCCGAAGGTGCTAAGAGGATGCTTGTATATGAATTTGTTGACAACGGAAATTTGGAGCAATGGTTGCACGGAGATGTAGGTTCTGTTAGTCCATTGACATGGGATATTCGGATAAGAATTGCTATTGGGACTGCAAAGGGATTGGCCTATTTGCATGAAGGCTTAGAACCTAAAGTTGTACACCGTGATGTAAAATCCAGTAACATTCTTTTGGATAGAAAGTGGCATCCAAAAGTATCCGACTTTGGACTAGCTAAGCTATTGGGATCTGAGGCAACCCATGTAACTACTCGTGTTATGGGGACCTTTGGTTATGTCTCTCCTGAGTATGCAAGTACAGGAATGCTTAATGAGAGAAGTGATGTGTATAGTTTTGGAGTTTTACTAATGGAAATTATAACCGGAAGAAGTCCGATCGATTATTCCAGACCTGCGGGAGAGATGAACTTGGTCGATTGGTTTAAAGGAATGGTGGCAAATCGACGTGGTGAGGAGGTTGTAGATCCCCTGATTGAGGTTCAGCCCTCACCAAGAGCTTTAAAGCGTGTATTGCTTGTTTGTCTCCGTTGCATAGACATGGATGCTGTTAAGCGGCCAAAAATGGGGCAAATTGTTCATATGCTAGAGGCAGATGACTTTCCATTTCGCACAGAGCTGAGATCTATTAGTGAAAAAGATTATCATCCTTCAAGTGAAGAAGCTACCGCTAGATTAAAATATTCATGGAAACAGGGCGGTGGGGATGGCTTGGAGCGATCAAGATAG 1434 44.42 MAVSGNRSAEVQASDDSVTRTLNSKTTIFSLNLYVVIGIIAACLIAAFLVIFLCVRKSKCSRKSKIRVKHSPGLRPLDSNEIPEIKAVDCVQNCDKVGAGAEIINPMKIIDIETGREKKSEESDASASSGSRSDVSVETPNIGWGQWYSLKELEIATCGFVEENVIGEGGYGIVYKGIFPDGSVVAVKNLLNNKGQAEKEFRVEVEAIGKVRHKNLVGLIGYCAEGAKRMLVYEFVDNGNLEQWLHGDVGSVSPLTWDIRIRIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWHPKVSDFGLAKLLGSEATHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSRPAGEMNLVDWFKGMVANRRGEEVVDPLIEVQPSPRALKRVLLVCLRCIDMDAVKRPKMGQIVHMLEADDFPFRTELRSISEKDYHPSSEEATARLKYSWKQGGGDGLERSR 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4513517 4516657 - Bma016835.1 Bma03g00549 79222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00549 477 CDD STKc_IRAK 166 432 - -
Bma03g00549 477 MobiDBLite consensus disorder prediction 115 137 - -
Bma03g00549 477 SUPERFAMILY Protein kinase-like (PK-like) 134 432 IPR011009 -
Bma03g00549 477 Pfam Protein kinase domain 161 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00549 477 Gene3D Phosphorylase Kinase; domain 1 121 235 - -
Bma03g00549 477 SMART serkin_6 160 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00549 477 PANTHER OS01G0323000 PROTEIN 9 448 - -
Bma03g00549 477 PANTHER OS03G0227900 PROTEIN 9 448 - -
Bma03g00549 477 Gene3D Transferase(Phosphotransferase) domain 1 236 442 - -
Bma03g00549 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Bma03g00549 477 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
Bma03g00549 477 ProSiteProfiles Protein kinase domain profile. 160 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00549 Bma-Chr3:4513517 Bma05g00040 Bma-Chr5:2169428 0 dispersed
Bma15g01003 Bma-Chr15:38971692 Bma03g00549 Bma-Chr3:4513517 1.14E-93 dispersed
Bma03g00549 Bma-Chr3:4513517 Bma15g00184 Bma-Chr15:1925429 2.59E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66394 PF00069 Pkinase 8.10E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00549 - - jre:109011190 677.167