Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00552 CCCGTTCTATTTCACTCTGCAATTCTAATGTCTTCTGCCGATACTGAGTATCGTTTGTTCGTAGGTGGGCTCGCTTGGGCCACCGACGAGAATACCTTAGAGCAAGCCTTTTCTCCTTTTGGCGATATCGTTGAATCGAAGATTATCAATGACCGTGAGACCGGTAGATCTAGAGGTTTTGGATTCGTGACCTTCAGCAACGAGAAGTCTATGAGAGACGCTATCGAAAGCATGAACGGCTCGAGCCTTGATGGTCGTAACATCACAGTTAACGAGGCTCAGTCACGTGGAAGCGGTGGTGGTGGCGGAGGATTTGGCCGTGGCGGTGGTGGTTATGGACGTGGTGGTGGTGGTTACGGTGGCGGCGGTGGTTACGGTGGCGGCGGTGGTTACGGTGGTGGCGGTCGCCGTGATGGAGGTGGTGGTGGTGGTGGTTATAACCGTGGAAACGGAGGAGGATACGGTGGTGGAGGAGGAGGACGTGAGCGTGGATATGGTGACGGTGGTGCTCGCTACTCGAGGGGTGGCGGTGGATCAGACGGCGGTAATTGGAGGAATTAA 561 54.9 PVLFHSAILMSSADTEYRLFVGGLAWATDENTLEQAFSPFGDIVESKIINDRETGRSRGFGFVTFSNEKSMRDAIESMNGSSLDGRNITVNEAQSRGSGGGGGGFGRGGGGYGRGGGGYGGGGGYGGGGGYGGGGRRDGGGGGGGYNRGNGGGYGGGGGGRERGYGDGGARYSRGGGGSDGGNWRN 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4542593 4543423 + Bma016838.1 Bma03g00552 79225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00552 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Bma03g00552 186 PANTHER GEO13361P1-RELATED 10 136 - -
Bma03g00552 186 SMART rrm1_1 18 91 IPR000504 GO:0003723
Bma03g00552 186 Gene3D - 9 113 IPR012677 -
Bma03g00552 186 MobiDBLite consensus disorder prediction 79 102 - -
Bma03g00552 186 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 10 136 - -
Bma03g00552 186 SUPERFAMILY RNA-binding domain, RBD 16 119 IPR035979 GO:0003676
Bma03g00552 186 MobiDBLite consensus disorder prediction 127 186 - -
Bma03g00552 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Bma03g00552 186 MobiDBLite consensus disorder prediction 79 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00552 - - K13195 qsu:112027985 152.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00063 Bma-Chr3:515368 Bma03g00552 Bma-Chr3:4542593 3.55E-22 dispersed
Bma03g00552 Bma-Chr3:4542593 Bma06g01271 Bma-Chr6:49806530 1.27E-24 dispersed
Bma07g00462 Bma-Chr7:5605224 Bma03g00552 Bma-Chr3:4542593 2.89E-14 dispersed
Bma03g00552 Bma-Chr3:4542593 Bma08g00922 Bma-Chr8:48203176 2.79E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00552 Bma_Chr03 FPKM 7.478489 7.586464 11.108525 10.973775 27.713362 29.1926 30.509951 19.162384 18.265896 19.246338