Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00554 | GAGATGAACAGAGCCTTGCCGGAGATGCTCCACTGCTTCATTGCCCCAGGAAATTGCGCCGACATGACCGTCTTGGAGAGGCAGACAGCCCGTCTCAAATGGCACCAAGACCAGCTTCACCACCACAACCTCCACAGCTACTTTCCCCAATCTTTTCCGGCGCCAATTCAGCCTGCTTATGTCCCTGACTCGCTTATCGGCTCCCGGGAAACAGAGCTCGGAGAGGTCTTGATTGGGTCGGTCAAGCCCGACCCAGGTTTGGAAAATGGGTGGCCGGAGTTGGGCAAGTTTGAGACTCCGACCATGGATTTTGGGTCTGGACTGGAACTCGATCCTTCCATTTCAAGAACTTCAGGCAGTCCACCAGCGATGATGGAAGCGAAGAACAGAGAATCTGTTTTGTCTGAGAAACTCAACCCTACCGTCGGAAGAGAAAGCTTTAAGAAAAGAAAGACGAACACAAAGATGGTTAGCGAAGAAGACACGAAAGAAAAAAGGATCAAAGTATGTGCAGAAGAAGGAGACTCGAAGGTTACAGACCAAATTCAGACAAAAAACAACTCCACTGCCACGACAGCCAATAGAGAAACCTCCGCAGATACATCAAAGGAGAATTCAAAAGCTTCGGAGGTTCAAAAACCAGATTACATTCACGTTCGAGCTCGTCGAGGCCAAGCCACAGACAGCCATAGCCTCGCTGAAAGAGCCAGAAGAGAAAAAATTAGCGAGAGAATGAAGTATCTGCAAGATTTAGTTCCAGGATGTAATAAAATTACAGGAAAAGCTGGAATGCTAGACGAAATTATCAACTATGTTCAATCTCTGCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCTGCTGTGAACCCACGTCTTGAATTCAATGTGAACGTCGATGACATCTTTCCCAAAGAGGAACATCCCACATCCAATTTTCCACCAGTAGGAATACAATCAGAGCTCAACAGCCCTGCCTATCTCCACTTTGATCAATCAAATCCAATGGCTTCATATTGTGGAATGGATCCATCCATCACGGGGCTTCGCCGGACAATCAGCGCTCCGGTTTCAATCCCGGAAAATTTTCTAGACTCCGCCTGCTTTCCGGTTAGTTCTTCCACTCCCTGCAGCCTCTGCTCACTGCTTAGCCTTAAACTTTACATCTTATTTTCTCACTAA | 1182 | 47.04 | EMNRALPEMLHCFIAPGNCADMTVLERQTARLKWHQDQLHHHNLHSYFPQSFPAPIQPAYVPDSLIGSRETELGEVLIGSVKPDPGLENGWPELGKFETPTMDFGSGLELDPSISRTSGSPPAMMEAKNRESVLSEKLNPTVGRESFKKRKTNTKMVSEEDTKEKRIKVCAEEGDSKVTDQIQTKNNSTATTANRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLEFNVNVDDIFPKEEHPTSNFPPVGIQSELNSPAYLHFDQSNPMASYCGMDPSITGLRRTISAPVSIPENFLDSACFPVSSSTPCSLCSLLSLKLYILFSH | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4562973 | 4564520 | + | Bma016840.1 | Bma03g00554 | 79227 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00554 | 393 | SMART | finulus | 231 | 281 | IPR011598 | GO:0046983 | |
Bma03g00554 | 393 | PANTHER | TRANSCRIPTION FACTOR BHLH63-LIKE | 21 | 371 | - | - | |
Bma03g00554 | 393 | MobiDBLite | consensus disorder prediction | 175 | 215 | - | - | |
Bma03g00554 | 393 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 21 | 371 | IPR024097 | GO:0006355 | |
Bma03g00554 | 393 | Gene3D | - | 222 | 299 | IPR036638 | GO:0046983 | |
Bma03g00554 | 393 | MobiDBLite | consensus disorder prediction | 200 | 215 | - | - | |
Bma03g00554 | 393 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 225 | 275 | IPR011598 | GO:0046983 | |
Bma03g00554 | 393 | MobiDBLite | consensus disorder prediction | 180 | 199 | - | - | |
Bma03g00554 | 393 | CDD | bHLH_AtBPE_like | 215 | 298 | - | - | |
Bma03g00554 | 393 | Pfam | Helix-loop-helix DNA-binding domain | 229 | 276 | IPR011598 | GO:0046983 | |
Bma03g00554 | 393 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 223 | 294 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00554 | Bma-Chr3:4562973 | Bma06g00747 | Bma-Chr6:38766134 | 3.42E-51 | dispersed | |
Bma05g00457 | Bma-Chr5:15581208 | Bma03g00554 | Bma-Chr3:4562973 | 9.44E-135 | transposed | |
Bma12g00509 | Bma-Chr12:16505688 | Bma03g00554 | Bma-Chr3:4562973 | 2.07E-91 | transposed | |
Bma03g00554 | Bma-Chr3:4562973 | Bma08g00792 | Bma-Chr8:45414433 | 0 | wgd | |
Bma03g00554 | Bma-Chr3:4562973 | Bma08g00318 | Bma-Chr8:4767107 | 3.43E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57000 | PF00010 | HLH | 1.00E-06 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00554 | - | - | jre:109013802 | 443.736 |