Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00554 GAGATGAACAGAGCCTTGCCGGAGATGCTCCACTGCTTCATTGCCCCAGGAAATTGCGCCGACATGACCGTCTTGGAGAGGCAGACAGCCCGTCTCAAATGGCACCAAGACCAGCTTCACCACCACAACCTCCACAGCTACTTTCCCCAATCTTTTCCGGCGCCAATTCAGCCTGCTTATGTCCCTGACTCGCTTATCGGCTCCCGGGAAACAGAGCTCGGAGAGGTCTTGATTGGGTCGGTCAAGCCCGACCCAGGTTTGGAAAATGGGTGGCCGGAGTTGGGCAAGTTTGAGACTCCGACCATGGATTTTGGGTCTGGACTGGAACTCGATCCTTCCATTTCAAGAACTTCAGGCAGTCCACCAGCGATGATGGAAGCGAAGAACAGAGAATCTGTTTTGTCTGAGAAACTCAACCCTACCGTCGGAAGAGAAAGCTTTAAGAAAAGAAAGACGAACACAAAGATGGTTAGCGAAGAAGACACGAAAGAAAAAAGGATCAAAGTATGTGCAGAAGAAGGAGACTCGAAGGTTACAGACCAAATTCAGACAAAAAACAACTCCACTGCCACGACAGCCAATAGAGAAACCTCCGCAGATACATCAAAGGAGAATTCAAAAGCTTCGGAGGTTCAAAAACCAGATTACATTCACGTTCGAGCTCGTCGAGGCCAAGCCACAGACAGCCATAGCCTCGCTGAAAGAGCCAGAAGAGAAAAAATTAGCGAGAGAATGAAGTATCTGCAAGATTTAGTTCCAGGATGTAATAAAATTACAGGAAAAGCTGGAATGCTAGACGAAATTATCAACTATGTTCAATCTCTGCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCTGCTGTGAACCCACGTCTTGAATTCAATGTGAACGTCGATGACATCTTTCCCAAAGAGGAACATCCCACATCCAATTTTCCACCAGTAGGAATACAATCAGAGCTCAACAGCCCTGCCTATCTCCACTTTGATCAATCAAATCCAATGGCTTCATATTGTGGAATGGATCCATCCATCACGGGGCTTCGCCGGACAATCAGCGCTCCGGTTTCAATCCCGGAAAATTTTCTAGACTCCGCCTGCTTTCCGGTTAGTTCTTCCACTCCCTGCAGCCTCTGCTCACTGCTTAGCCTTAAACTTTACATCTTATTTTCTCACTAA 1182 47.04 EMNRALPEMLHCFIAPGNCADMTVLERQTARLKWHQDQLHHHNLHSYFPQSFPAPIQPAYVPDSLIGSRETELGEVLIGSVKPDPGLENGWPELGKFETPTMDFGSGLELDPSISRTSGSPPAMMEAKNRESVLSEKLNPTVGRESFKKRKTNTKMVSEEDTKEKRIKVCAEEGDSKVTDQIQTKNNSTATTANRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLEFNVNVDDIFPKEEHPTSNFPPVGIQSELNSPAYLHFDQSNPMASYCGMDPSITGLRRTISAPVSIPENFLDSACFPVSSSTPCSLCSLLSLKLYILFSH 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4562973 4564520 + Bma016840.1 Bma03g00554 79227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00554 393 SMART finulus 231 281 IPR011598 GO:0046983
Bma03g00554 393 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 21 371 - -
Bma03g00554 393 MobiDBLite consensus disorder prediction 175 215 - -
Bma03g00554 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 371 IPR024097 GO:0006355
Bma03g00554 393 Gene3D - 222 299 IPR036638 GO:0046983
Bma03g00554 393 MobiDBLite consensus disorder prediction 200 215 - -
Bma03g00554 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 275 IPR011598 GO:0046983
Bma03g00554 393 MobiDBLite consensus disorder prediction 180 199 - -
Bma03g00554 393 CDD bHLH_AtBPE_like 215 298 - -
Bma03g00554 393 Pfam Helix-loop-helix DNA-binding domain 229 276 IPR011598 GO:0046983
Bma03g00554 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 294 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00554 Bma-Chr3:4562973 Bma06g00747 Bma-Chr6:38766134 3.42E-51 dispersed
Bma05g00457 Bma-Chr5:15581208 Bma03g00554 Bma-Chr3:4562973 9.44E-135 transposed
Bma12g00509 Bma-Chr12:16505688 Bma03g00554 Bma-Chr3:4562973 2.07E-91 transposed
Bma03g00554 Bma-Chr3:4562973 Bma08g00792 Bma-Chr8:45414433 0 wgd
Bma03g00554 Bma-Chr3:4562973 Bma08g00318 Bma-Chr8:4767107 3.43E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57000 PF00010 HLH 1.00E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00554 - - jre:109013802 443.736