Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00562 ATGATGTTTGGAGCCTTCGTAGGACTCGGAGCCATGGTGATCAAATGGCACAAGAGGCCACAAGACTGGCAGAAGAGAAACAGCTTCTCTTCGTGGCTACTTCCAGTCCATGCAGGCGACACGAGCTTCATGACGAGCAAAACCTCGTATGGATCTCATAAAACCAACATTTACTCGTCAAGTTTAGGACTTGGAAGGTTCTTCTCGTTTGCAGAGTTGCAAGAAGCGACCAAAAACTTCGACTCCAACGAGATAATTGGTGTCGGAGGATTCGGAAACGTCTATCTCGGAGTGATCGACGAGGGGACGAAAGTCGCAGTCAAGCGAGGAAATCCTCAATCGGAGCAAGGAATTACCGAATTCGAGACGGAAATTCAGATGCTCTCGAAGCTCAGACATAGGCATCTAGTTTCTCTAATTGGCTACTGTGATGAGAACTCAGAAATGATCTTAGTCTACGAATACATGTCAAATGGACCTTTCAGAGACCACTTGTATGGAAAGGACTTGGCCCCACTGTCATGGAAGCAACGGCTCGAAATCTGCATCGGCGCGGCCCGAGGACTCCACTATCTCCACACCGGCACTGCACAAGGAATCATACACCGTGATGTCAAGACGACCAACATTTTGCTCGACGATAACTTCACCGCCAAGGTGGCTGATTTTGGACTGTCGAAGGATACACCGATGGGGCAAGGCCATGTGAGCACAGCCGTAAAAGGAAGTTTTGGGTACTTAGATCCAGAGTATTTCCGGAGGCAGCAACTGACGGACAAATCCGACGTTTATTCATTTGGGGTTGTTCTACTTGAAACGCTTTGCGTACGGCCTGCAATCAACCCGTCTTTGCCAAGGGAACAGGTTAATTTGGCCGATTGGGCTATGCAGTGGAAGAGGAAGGGGCTGCTGGAGAAGATTACTGATCCTTTACTCGTTGGAACCATTAATCCTGAATCCATGAAGAAGTTTGCTGAGGCTGCAGAGAAGTGCTTGGCTGAGCATGGAGTTGACAGACCAACCATGGGAGACGTGCTGTGGAATTTGGAGTATGCTTTGCAGCTTCAAGAGGCTTTTATGCAGGGCCAAACAGAAGACGAGAGTAACTCAACAATGGCGGTTCCTGTCAGTGCCCCTACAACGGAGAATCGTTCCCGTTTCTTCCACCCCAGAAGAAAACAAGGCTTCTCCTGCTGA 1197 48.96 MMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPVHAGDTSFMTSKTSYGSHKTNIYSSSLGLGRFFSFAELQEATKNFDSNEIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFETEIQMLSKLRHRHLVSLIGYCDENSEMILVYEYMSNGPFRDHLYGKDLAPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDDNFTAKVADFGLSKDTPMGQGHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLETLCVRPAINPSLPREQVNLADWAMQWKRKGLLEKITDPLLVGTINPESMKKFAEAAEKCLAEHGVDRPTMGDVLWNLEYALQLQEAFMQGQTEDESNSTMAVPVSAPTTENRSRFFHPRRKQGFSC 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4676900 4678096 + Bma016850.1 Bma03g00562 79235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00562 398 CDD STKc_IRAK 86 350 - -
Bma03g00562 398 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Bma03g00562 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Bma03g00562 398 PANTHER BNAC03G60370D PROTEIN 1 382 - -
Bma03g00562 398 PANTHER OS07G0166700 PROTEIN 1 382 IPR045272 GO:0004714|GO:0006468
Bma03g00562 398 Gene3D Transferase(Phosphotransferase) domain 1 156 376 - -
Bma03g00562 398 SMART serkin_6 80 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00562 398 Pfam Protein tyrosine and serine/threonine kinase 83 345 IPR001245 GO:0004672|GO:0006468
Bma03g00562 398 SUPERFAMILY Protein kinase-like (PK-like) 64 347 IPR011009 -
Bma03g00562 398 ProSiteProfiles Protein kinase domain profile. 80 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00562 398 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00562 Bma-Chr3:4676900 Bma08g00228 Bma-Chr8:2796119 0 dispersed
Bma14g01380 Bma-Chr14:25806942 Bma03g00562 Bma-Chr3:4676900 1.49E-50 transposed
Bma09g00183 Bma-Chr9:7050748 Bma03g00562 Bma-Chr3:4676900 8.46E-62 transposed
Bma03g00562 Bma-Chr3:4676900 Bma08g00788 Bma-Chr8:45273024 0 wgd
Bma03g00562 Bma-Chr3:4676900 Bma08g00312 Bma-Chr8:4637473 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66396 PF07714 PK_Tyr_Ser-Thr 5.00E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00562 - - jre:108986963 710.294