Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00566 ATGGCGGCCACTCCTTCCACTGATGATGCTCCACTTTCATCCGAAGGTGGCGAGAGCTACGACATGGATAAGGACCACCCCACATTTGTTTGGGGGACGAATATAAGCGTCGATGATGTTAAAGGGGCGATTATTCGTTTCTTGAAACATTTCCGGGATTCCAGAGCTTCACAATCGGAAGGAGAATTTATTACTGAAGGGAAGTATACGGAGGCAATCAAACGGGTTCTTGAGATCGAAGGAGATTCTCTGGATGTTGATGCCCGAGATGTATTTGACTATGATTCCGATTTGTATACTAAGATGGTGAGGTACCCCCTTGAAGTTCTGGCAATTTTTGATATTGTTTTGATGGAAATGGTCCCCCAAATTAACCCTCTATTTGAGAAGCACATTCAAACACGGATTTACAATCTCAAAACCTCTACTTCAATGAGAAATCTCAATCCATCCGACATTGAGAGGATGGTATCACTGAAAGGAATGATTATTCGGTGTAGTTCCATAATACCTGAGATTAGAGAAGGGATGTTTAGGTGTCTTGTCTGTGGGTACTACTCGGACCCCATTGCAATAGAGAGAGGACGAATCACTGAGCCAACTGTTTGCTTGAAAGAAGAGTGCCAAGCAAAAGATTCCATGACTCTAGTTCACAATCGATGCAGATTCGCTGACAAGCAGATTGTGAGGCTTCAGGAGACTCCTGATGAGATTCCAGACGGGGGCACACCACACACTGTGAGCTTGTTGATGCATGACAAGCTGGTGGATTCTGGAAAGCCAGGTGACAGAGTTGAGGTTACTGGGGTTTACCGGGCGATGACTGTGAGAGTTGGACCTACACAGAGAACCACATATATAGATTGTCTTCACGTAAAGAAGGCTGATAAGTCAAGAATGCAAGTGGAGGATCTTATGGAAGTAGAAAATCGATTGGGCTCGAATTTGGATGATCTCTCTTTTGATGAAGTGACTGTGGAGAAGTTGAAAGATCTATCAAAATTACCTGACATATACAATAGACTAACCAGATCGTTGGCACCAAACATTTGGGAGCTAGATGATGTTAAGAAAGGTCTCCTTTGCCAGCTTTTTGGTGGCAATGCTTTAAAGTTGCCATCTGGTGCTAGTTTCCGCGGAGATATAAACGTACTTCTGGTTGGTGATCCTGGAACTAGCAAGTCTCAGCTACTGCAATACATACACAAGCTATCTTCTCGAGGTATTTACACAAGTGGAAGGGGGAGTTCTGCTGTTGGTTTGACCGCTTATGTTACTAAAGATCCAGAAACAGGGGAAACAGTTCTGGAGAGTGGAGCATTGGTCTTGAGTGACAGAGGCATCTGCTGTATTGATGAATTTGATAAAATGTCTGATAATGCAAGGAGCATGTTACATGAGGTTATGGAACAGCAAACGGTTTCTATAGCCAAGGCAGGAATCATTGCCTCTCTTAATGCAAGGACCTCAGTGTTGGCTTGTGCAAATCCAAGTGGCTCACGTTACAATCCTCGTTTGTCTGTGATTGACAACATACACCTTCCTCCAACTTTATTGTTTGACTTGATTTACTTAATTCTTGACAAAGCTCATGAGGATACAGATAGGCGCCTTGCAAAGCATATTGTTTCATTACACTTTGAGAATCCCGAGATTTCAGAGCAAGATTTCTTGGATCTTCATACACTAACTGCATATGTGAGTTACGCTCGAAAGCATGTTCAGCCACAATTATCAGATGAGGCTGCTGAAGAATTAACTCGAGGTTATGTAGAGTTGAGGAGGAGAGGAAATTTCCAGGCAGTGGTTATAACAGCTACTCCCAGGCAGATTGAAAGTTTAGTTGAAAAGCACGACGTAGATGAGGCATTTCGACTTCTTGAAGTTGCAATGCAACAATCAGCAACAGATCACTCGACTGGAACAATTGATATGGATCTAATAACAACTGGAGTTTCAGCTAGTGAAAGAATGAAACGAGAAAGATTGGTCTCAGCAACCCGCAATATTATTATGGAGAAGATGCAGCTTGGCGGCCCCTCCATGCGATTACTGGAGTTGCTAGAGGAGCTAAAGAAGCAGAGCTCTAGTAGTGAAGTCCATCTCAATGATCTGAGGACTGCGGTGGCAACTCTGGCAAGCGAGGGATTTGTAGGAATCCAAGGTGATACCATTAAAAGGATACTCAATTCAGAGAAGAGTCCATTTCAGCGAACTTATGCTGCTCAGATTAAGAAGTGTGGAGAGATGGCGCGCAAATTGCGTTTTTTCAAGGAGCAAATGTCAAAGGCTGGATTAGTTTCAAAAGGGTTTATAACAAAAGCTGACGTCAATGTGGATGACCTAGAGGTCAAACTTGGTGAACTTGAGGCGGAATTGGCTGAAATAAATGCAAATGGCGGGAAGTTACAGCGTTCATACAGTGAACTTATAGAATACAAATTTGTTCTGCAGAAGGCTGGTGAGTTTTTCCAGCTAGCACAAAGCAGTGCCTTAGAACAGCAGAGAGAATATGAATCACGTCATGATATGTCAGCTGATGCTTCAAAGCAAATCAAGTTGGGGTTTCTTGCTGGACTTGTGCCTATGGAGAAATCTGTGGCTTTTGAGAGGATTTTGTTTCGTGCTACCCGGGGAAATGTATTTCTGAAGCAGGCTGGTGTTGAAGAACCTGTAATAGATCCTGTTTCTGGAGACAAGATTGAAGTTTCAGGAAGGCTCTCTGAACTGAAAACAACCATAGATGTTGGACTGCTGCAACGAGGAAATTTGTTGCTGACCATCGGTGATCAAATTGAGCAATGGGACATTTTGGTGAGAAAGGACAAGTCAATATACCATACATTGGACATGCTTAGCCTTGATGTGACAAAAAAGTGTTTGGTGGCTGAGGGATGGTCTCCAGTTTTTGCAACAAAACAGATCCAGGATGCATTGCAACGAGCAGCATTTGATTCGAATTCCCAAGTTGGGGCCATATTCCAGGTTCTGCGAACAAAGCTTGGTGACATCATGGAAATGACCTTTGGAGGGCGCTATGTTATTATGATGATGGCACTCTTCTCAATATATACAGGTCTAATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTTTTTGGTCGCTCAGCTTATGCTTGTCGTGACCTCGACTGCAGAGACGCAACGACAATTGGATTGATAAAGGTGCGGCCCACCTACCCATTCGGTGTAGACCCTGTATGGCATGGTACTCGAAGTGAGCTGCCATTCCTCAACTCTTTGAAGATGAAAATGTCAATCCTTCTCGGGGTGGCCCAAATGAACCTTGGAATCATACTTAGCTATTTCAATGCAAAATTTTTCAGAAACGGCCTTAATATCTGGTACCAGTTTTTGCCACAGATGATATTTTTGAACTCTCTTTTTGGATACCTATCTCTCCTCATAATTTTAAAATGGTGCACTGGTTCACAAGCGGATTTGTACCATATTGTGCTTCTTTTACTGGCACTTGTAGCTGTACCATGGATGCTGCTTCCAAAACCTCTTATATTGAAGAAGCAACACCAGGAGAGGCATCACGGTGAATCTTATGAGCCATTACAGAGTGAAGACTTACTTCAATTAGAATCAAATCATAATGCTCATGGTCATGAGGAATTTGAGTTCAGTGAAGTTTTTGTGCATCAACTTATACACACAATAGAATTTGTACTTGGAGCAGTGTCAAATACTGCTTCCTACCTTCGTCTTTGGGCCCTAAGTCTTGCCCACTCAGAACTATCGAGTGTATTCTATGAGAAGGTTCTTCTTCTAGCTTGGGGGTTCAACAATGTAATCATCCTTATAGTAGGCATCATTGTCTTTGTATTTGCCACCGTTGGCGTGTTACTAGTGATGGAAACCCTCAGTGCTTTTCTTCACGCACTGCGTCTTCATTGGGTGGAATTCCAAAACAAATTTTACGAGGGAGATGGCTACAAATTCTATCCATTTTCATTTTCTTTGCTGGACGATGAAGCTGATTGA 4011 42.76 MAATPSTDDAPLSSEGGESYDMDKDHPTFVWGTNISVDDVKGAIIRFLKHFRDSRASQSEGEFITEGKYTEAIKRVLEIEGDSLDVDARDVFDYDSDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIYNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREGMFRCLVCGYYSDPIAIERGRITEPTVCLKEECQAKDSMTLVHNRCRFADKQIVRLQETPDEIPDGGTPHTVSLLMHDKLVDSGKPGDRVEVTGVYRAMTVRVGPTQRTTYIDCLHVKKADKSRMQVEDLMEVENRLGSNLDDLSFDEVTVEKLKDLSKLPDIYNRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINVLLVGDPGTSKSQLLQYIHKLSSRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLFDLIYLILDKAHEDTDRRLAKHIVSLHFENPEISEQDFLDLHTLTAYVSYARKHVQPQLSDEAAEELTRGYVELRRRGNFQAVVITATPRQIESLVEKHDVDEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMKRERLVSATRNIIMEKMQLGGPSMRLLELLEELKKQSSSSEVHLNDLRTAVATLASEGFVGIQGDTIKRILNSEKSPFQRTYAAQIKKCGEMARKLRFFKEQMSKAGLVSKGFITKADVNVDDLEVKLGELEAELAEINANGGKLQRSYSELIEYKFVLQKAGEFFQLAQSSALEQQREYESRHDMSADASKQIKLGFLAGLVPMEKSVAFERILFRATRGNVFLKQAGVEEPVIDPVSGDKIEVSGRLSELKTTIDVGLLQRGNLLLTIGDQIEQWDILVRKDKSIYHTLDMLSLDVTKKCLVAEGWSPVFATKQIQDALQRAAFDSNSQVGAIFQVLRTKLGDIMEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGRSAYACRDLDCRDATTIGLIKVRPTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFRNGLNIWYQFLPQMIFLNSLFGYLSLLIILKWCTGSQADLYHIVLLLLALVAVPWMLLPKPLILKKQHQERHHGESYEPLQSEDLLQLESNHNAHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGFNNVIILIVGIIVFVFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFSLLDDEAD 1336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4689080 4710676 - Bma016854.2 Bma03g00566 79239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00566 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 638 IPR027417 -
Bma03g00566 1336 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1158 1335 - -
Bma03g00566 1336 Pfam MCM P-loop domain 326 546 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 Gene3D - 323 636 IPR027417 -
Bma03g00566 1336 ProSitePatterns MCM family signature. 447 455 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bma03g00566 1336 PANTHER VACUOLAR PROTON ATPASES 727 902 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 SMART mcm 141 632 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 Pfam MCM AAA-lid domain 562 615 IPR041562 -
Bma03g00566 1336 MobiDBLite consensus disorder prediction 1 23 - -
Bma03g00566 1336 ProSiteProfiles MCM family domain profile. 338 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 PANTHER VACUOLAR PROTON ATPASES 902 1000 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 PANTHER VACUOLAR PROTON ATPASES 1158 1335 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1000 1160 - -
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein family signature 491 503 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein family signature 467 480 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g00566 1336 Pfam V-type ATPase 116kDa subunit family 1000 1152 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 Pfam V-type ATPase 116kDa subunit family 1157 1328 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 Pfam V-type ATPase 116kDa subunit family 902 1000 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 Pfam V-type ATPase 116kDa subunit family 729 902 IPR002490 GO:0033179|GO:0046961|GO:1902600
Bma03g00566 1336 Gene3D - 172 224 - -
Bma03g00566 1336 Pfam MCM OB domain 145 274 IPR033762 -
Bma03g00566 1336 Gene3D - 637 718 IPR036388 -
Bma03g00566 1336 Pfam MCM N-terminal domain 43 141 IPR027925 -
Bma03g00566 1336 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 902 1000 - -
Bma03g00566 1336 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 727 902 - -
Bma03g00566 1336 Gene3D - 145 285 IPR012340 -
Bma03g00566 1336 CDD MCM4 341 630 - -
Bma03g00566 1336 Gene3D - 34 139 - -
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 167 180 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 218 230 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 354 365 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 632 641 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma03g00566 1336 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 500 517 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma03g00566 1336 SUPERFAMILY Nucleic acid-binding proteins 63 287 IPR012340 -
Bma03g00566 1336 Coils Coil 772 806 - -
Bma03g00566 1336 PANTHER VACUOLAR PROTON ATPASES 1000 1160 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00566 Bma08g00785 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00566 Bma-Chr3:4689080 Bma07g00127 Bma-Chr7:1993259 6.34E-62 dispersed
Bma03g01547 Bma-Chr3:51453499 Bma03g00566 Bma-Chr3:4689080 5.97E-18 transposed
Bma04g01647 Bma-Chr4:52347896 Bma03g00566 Bma-Chr3:4689080 1.52E-44 transposed
Bma07g00859 Bma-Chr7:29648638 Bma03g00566 Bma-Chr3:4689080 3.89E-99 transposed
Bma07g01373 Bma-Chr7:49350150 Bma03g00566 Bma-Chr3:4689080 8.64E-92 transposed
Bma10g01097 Bma-Chr10:32664098 Bma03g00566 Bma-Chr3:4689080 2.78E-57 transposed
Bma15g00493 Bma-Chr15:5716328 Bma03g00566 Bma-Chr3:4689080 6.55E-96 transposed
Bma03g00566 Bma-Chr3:4689080 Bma05g00148 Bma-Chr5:4434871 2.49E-98 wgd
Bma03g00566 Bma-Chr3:4689080 Bma08g00785 Bma-Chr8:45234372 1.52E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00566 K02212 - csv:101211850 1228.77