Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00569 ATGGTGGGTCGAAAGGACGTGGGGAGGAAGTATAGTAATGATAGCTCTGGTGGAAGTGGCGCTTGTGATTATAGAAGAGAGAAAGTAAAAGTTGGGAAAGAACATAAGGTGAAGTTAAGAAGCGTAGATGATCATCGTAAAACAAATGTGAAATCTTTCGCTGCTAGAAAGAAGAAAGAGGGTTCGTCTGTTGAGCCCGAGCCAGTGGAAAAAGATGGAAATAACACAACTGTGATGATCAGAAACATACCCAGCAAATACACGCGTGATATGATGTTGAAGTTTCTCGATCAACATTGCATGAAGCAGAACCAACAGCTGGAAAAACACAGTTCCATCTATCAAGATCAAGTAGAAGATAATCCTACATCAGCTTTTGATTTCCTCTATTTGCCAATAGATTTCCATACTGGAATGAACAAAGGCTATGCCTTCGTCAACTTCACAAGTTCAATGGCAATGTGGAAGTTTTACGAGGAAACCAATAATCAGACTTGGGATCTCTTTCATTCCAACAAGATACGCCAAATTGCCCATGCTAGGCTACAGGGTAAGGCAGAGCTGGTGAGACACTTCGAAAACATGGGGTTTCCTTGCGAATCAGATGAAGTTCTACCAGTTTACTTCAGCCCCCCTCGCGACGGATCAAGGGAGTGGGTGGAGCTAACGACTGTAGGAAGAAAAATAGGGCGCAGAAAGTACAAATCATCGCATCACTCTAACACAAACCAAATCTAA 738 42.55 MVGRKDVGRKYSNDSSGGSGACDYRREKVKVGKEHKVKLRSVDDHRKTNVKSFAARKKKEGSSVEPEPVEKDGNNTTVMIRNIPSKYTRDMMLKFLDQHCMKQNQQLEKHSSIYQDQVEDNPTSAFDFLYLPIDFHTGMNKGYAFVNFTSSMAMWKFYEETNNQTWDLFHSNKIRQIAHARLQGKAELVRHFENMGFPCESDEVLPVYFSPPRDGSREWVELTTVGRKIGRRKYKSSHHSNTNQI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4737625 4738954 + Bma016857.1 Bma03g00569 79242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00569 245 PANTHER MEI2 C-TERMINAL RRM ONLY LIKE 1 28 225 - -
Bma03g00569 245 SUPERFAMILY RNA-binding domain, RBD 70 167 IPR035979 GO:0003676
Bma03g00569 245 Pfam RNA recognition motif 2 113 192 IPR007201 -
Bma03g00569 245 PANTHER RNA BINDING PROTEIN 28 225 - -
Bma03g00569 245 MobiDBLite consensus disorder prediction 21 67 - -
Bma03g00569 245 MobiDBLite consensus disorder prediction 1 75 - -
Bma03g00569 245 Gene3D - 12 186 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00569 - - - zju:112492748 220.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00569 Bma-Chr3:4737625 Bma14g01833 Bma-Chr14:39249713 3.68E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g21 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1180 Cone8ag1225 . . . . . . Blo04g00534 . . . Bpe15g00847 . Bma03g00569 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016262 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00569 Bma_Chr03 FPKM 0.554739 0.0 0.0 0.0 0.235674 0.0 0.0 0.0 0.0 0.0