Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00573 ATGAGTTTGGACAGCAGGAGTAGAAGTCGGAGTCGGAGCAGGAGCAGGAGCCCTTTGGATCGTAAGATCCGTTCTGATCGCTTTTCATATCGTGATGCACCATACAAGAGAGACTCCCATCGGGGTTTCAGTAGGGACAATCTTTGCAAGAATTGTAAGAGACCAGGCCACTTCGCTAGGGAATGCCCAAATGTTGCAGTTTGTCACAACTGTGGTCTTCCTGGGGGTTGCCCTAAAGCATATCATCCTTCATGTGTCAACCGAGATGAAGCATTTTTTCGAGCTAAGGGTCGATGGAATTGTGGTTGGCACCTTTGTAGCAATTGTGGAAAAACTGCCAATTATATGTGTCTGACCTGTACATTTTCCTTGTGCAAAAGTTGTATCAAGGATGCAATTATCTTCTGTGTGAGAGGGAACAAAGGCTTCTGTGAGACTTGCATGAAGACCGTCATGCTGATTGAAAAGAACGAGCATGGGAGCAGAGAAACGGGTCAAGTTGATTTTAATGACAAAAGTAGCTGGGAATATCTTTTTAAAGACTACTGGTCAGATGTAAAACAAAAGCTGTCTCTGACATTTGATGAGCTAACTCAGGCAAAGGTTCCTTGGAAAGGATCTGATATGCTAGCTAGTAAACAAGAATCTCCTCATGAACTTGATAATAAAGTAGATAGAGAATCAGATTCACATAGTTCTGGTAATCTTGATTCAAATGTCTCCAAAAGGAAAAAACCTAAGAAACTGTTGAAGTCGCACTCGAAAGAGAGGGATTCACCTCATTCTTCGAAAGTAACAAGTGTGGAAGGTATATCCGCAGCTGAGAGGATTGAGTGGGCATCAAAAGAGCTCATGGAATTCGTTATGCACATGAGGAATGGAGACAGATCGGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTGCTAGAATATATTAAGAGAAACAAACTACGCGATCCTCGTCGTAAAAGTCAAATTGTTTGTGATATAAGGTTGGAGACTTTGTTTGGCAAACCACGGGTGGGTCATTTTGAAATGTTAAAGCTACTTGAGTCCCACTTTCTTTTGAAAGAGGATGCCATGGCTGATGATCTTCAAGGGAGTGTGGTGGATACTGAGTCTAGTCAAATGGAGGTGGATGGAAACACTGATTCTGTAGTAAAGGCTGGTAAAGATAGGAAACGGAAGGGACGCAAAAAGAGTAATGGGAAAGGACTTCAATATAATGTTGATGATTATGCAGCCATTGATAGTCATAACATTAATTTGATTTACTTAAGACGTAATTTGGTTGAAGAACTTATTGATGATGTGGAAAATTTTCATAATAAGGTTGTTGGTACATTTGTTAGGATAAGGATATCAGGTAATGCTCAAAAGCAAGATTTGTATAGGCTGGTCCAAGTTGTCGGTACATGCAAAGCGGGTGAACCTTATAAAGTTGGTAAAAAGATGACTAATATCTTGCTAGAGATTTTGAATTTAAACAAGACAGAGATCATATCATCAGATATCATATCAAATCAGGAGTTCACTGAGGATGAGTGCAAGCGGCTCCGCCAGAGCATCAAATGTGGACTTCTTAGTAGGCTGACTGTGGGTGACATTCAAGAGAAAGCGATGGCATTACAAGAAGTTAGGGTTAAAGATGCTCTCTTAGTTTGTCGCATTTCTTTCTGGAGATTCTTCTGTGAGTTCATAAAAAGTTCTACTAAAATGAACTTTCGTGGTCCATTTCTTATCTTCCACGTTCACCTTCTACCTGTTCTGTTGCAGTGGCTAGAAGCAGAGATTGTTCGACTCAGTCATCTTCGTGATCGAGCTAGTGAAAAAGGGCGTAGAAAGGAATATCCTTTTAACTTTGCTTTATTTTATACACATTTAAATATTGGAGAATGTGTGGAGAAATTACAGCTTCTCAAGACGCCTGAAGAGCGACAAAGAAGATTGGAGGAAATCACAGAAATTCATTCGGACCCAAATATGGATCCAAGTCATGAATCGGAGGAAGAGGAAGCTGTTAATGTGCTTTTATTATGTGCAGAAACCTACATTAAACCAAGAGGTAATAATGGCTTTGGAAGAAGGGGGAAGGAGATGATTTCTCCACGTAAAGGAGACTCCACTTTGAGTGATAACTGGAGTGGGATGAGAAATATTTCCAACACGAATATGGAATCAAATAGGAACTCGCTCGGCAAAAGCTATTCTAACAAAGTTGATGATGCAACTGGCAGCAGCAAGATTGCAAATGACTATACCAGGAATCAAGGTAGAGAAACGAACATTCAACTACCAATCAGTGAGGAAAAGCGACAACCTTATTCTGTCACAGAAGTCAGTCCTAGGAAGACGCAATCCATTGTTGACTCTCATTTGTCTTCTGCTCGTGAGTTGCAAATTTCCGCAGCGCCACTGTCTACCGTTGCAAACCAGACTGAGAGTAAAATCAACGAAGCAGAAAAAATGTGGCACTACAAAGATCCTTCTGGGAAAGTTCAGGGACCATTTTCTATCGTTCAGCTACGCAAGTGGAACACCACTGGTTACTTTCCTGCTGACTTGAGAATTTGGAATAGTGCTGAGAAGGAAGATGATTCTATACTTTTGAGTGATGCATTGGCTGGAAAATTCCACAAAGATTTATTGTTGATGGAAAACAGCATTCCGAAGGCTGAAATGGCACAGAACTCGAATTTACTGCCATATTCGGGGAAATCTCAAGGACTTCCTTTACAACATATTGTTGAAAGTCGGAGTCATGGTGCTTCAGATACTCGCAGCAATCCAAGTTCTTCAGGCCCTTCTGCTGCAGATAGTTTTAGATTTCAAAATGAAGTTAGTTCTATGGTAAGGGTACCTCCTTCAATCGAGGTTCCAAAATATTCTATGGATGGACGGACGTCCGAATATGGTATCAGAAACGAGTCCACCAACCTTCCTTCACCTACTCCTAGTTCAGGTGGAGCTAAGGGGCATCCTCCTCAACTGAATCCTCCGTTGTCAGAATCCAATTCATTTCCCGGAGGAAATGCCGGACTGCAACATTCTGTCGTCTTTACGAGAGATAGTGCTGCTAGAAGCTCTGAAGGGCAGGACAACAGCGTGGGTATAGGCTCTTTTAATACTCTTCAAATGCATACTGATTCAACCGGAGCGGCACCCTCTTTGGGAGAGGTTGCATTGAACCCATCTGCTGATATAAAAAGTATTAGTGCAAACCTCCAGAGTTTAGTTCAATCTCTAAACAGCCGTAGTGTTCCTATTCAAACTGAAGGGTGGGCGTCTGGATCTGTTCCAAGACCTGAAATGAATGCTCCGGGCCCTGCAACTGTAAGTGATTCCAAAGTTTGGGGGAGGAACTTCCCGGTGTCTCCCATGTCTAATCTGCCTCCGTCCGGTGCATGGAGACCTCCTGCACAGAGCAGTCAGCCAAACATGCAGTCTCCAGCTCCCACCAATTTGCCATGGGGCATGGGGTTAGAGAATCAGAACAACACTGGGTGGATCCCCCCACATCAGGGAAATCCAAATATTGGCTGGACCGGTCTCATGCCTGCGGTTGTCAACCCAAATTGGGCCACCCAGGGGCCACCAGCCGGAAATGTAAATCAAGGATGGGCGGCTCCGCCTCAAGGGCCAACTCCTGGAAATGTGGTTCCTAGTTGGGGGCCGGGCACATATAATCAGCCGCCGCCGCCACCACCTTCAAATGTAAACAGTGGTTGGATCCCTCCGCCTGCAAATCCAAATCCCGGGTGGGGGCCTCCGCCGGGGAACGTGGGTGTGGGAGGAAATGAACACAGGGAGTGGGGAAGGCAGACGTCGTTCAATGGGGGAGGAGGGTTTCCGAGGCCACCATTCAAAGGACAGAGAGTGTGCAAATACTACGAGAGTGGACACTGCAAGAAAGGAGCTGCTTGCGATTATCTGCACACCTGA 3942 44.04 MSLDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYKRDSHRGFSRDNLCKNCKRPGHFARECPNVAVCHNCGLPGGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSNCGKTANYMCLTCTFSLCKSCIKDAIIFCVRGNKGFCETCMKTVMLIEKNEHGSRETGQVDFNDKSSWEYLFKDYWSDVKQKLSLTFDELTQAKVPWKGSDMLASKQESPHELDNKVDRESDSHSSGNLDSNVSKRKKPKKLLKSHSKERDSPHSSKVTSVEGISAAERIEWASKELMEFVMHMRNGDRSVLSQFDVQALLLEYIKRNKLRDPRRKSQIVCDIRLETLFGKPRVGHFEMLKLLESHFLLKEDAMADDLQGSVVDTESSQMEVDGNTDSVVKAGKDRKRKGRKKSNGKGLQYNVDDYAAIDSHNINLIYLRRNLVEELIDDVENFHNKVVGTFVRIRISGNAQKQDLYRLVQVVGTCKAGEPYKVGKKMTNILLEILNLNKTEIISSDIISNQEFTEDECKRLRQSIKCGLLSRLTVGDIQEKAMALQEVRVKDALLVCRISFWRFFCEFIKSSTKMNFRGPFLIFHVHLLPVLLQWLEAEIVRLSHLRDRASEKGRRKEYPFNFALFYTHLNIGECVEKLQLLKTPEERQRRLEEITEIHSDPNMDPSHESEEEEAVNVLLLCAETYIKPRGNNGFGRRGKEMISPRKGDSTLSDNWSGMRNISNTNMESNRNSLGKSYSNKVDDATGSSKIANDYTRNQGRETNIQLPISEEKRQPYSVTEVSPRKTQSIVDSHLSSARELQISAAPLSTVANQTESKINEAEKMWHYKDPSGKVQGPFSIVQLRKWNTTGYFPADLRIWNSAEKEDDSILLSDALAGKFHKDLLLMENSIPKAEMAQNSNLLPYSGKSQGLPLQHIVESRSHGASDTRSNPSSSGPSAADSFRFQNEVSSMVRVPPSIEVPKYSMDGRTSEYGIRNESTNLPSPTPSSGGAKGHPPQLNPPLSESNSFPGGNAGLQHSVVFTRDSAARSSEGQDNSVGIGSFNTLQMHTDSTGAAPSLGEVALNPSADIKSISANLQSLVQSLNSRSVPIQTEGWASGSVPRPEMNAPGPATVSDSKVWGRNFPVSPMSNLPPSGAWRPPAQSSQPNMQSPAPTNLPWGMGLENQNNTGWIPPHQGNPNIGWTGLMPAVVNPNWATQGPPAGNVNQGWAAPPQGPTPGNVVPSWGPGTYNQPPPPPPSNVNSGWIPPPANPNPGWGPPPGNVGVGGNEHREWGRQTSFNGGGGFPRPPFKGQRVCKYYESGHCKKGAACDYLHT 1313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4786331 4799592 - Bma016862.1 Bma03g00573 79246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00573 1313 Pfam SWIB/MDM2 domain 281 354 IPR003121 -
Bma03g00573 1313 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 592 1313 - -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 1226 1257 - -
Bma03g00573 1313 Gene3D SWIB/MDM2 domain 269 363 IPR036885 -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 209 269 - -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 970 991 - -
Bma03g00573 1313 Pfam GYF domain 824 863 IPR003169 GO:0005515
Bma03g00573 1313 ProSiteProfiles SWIB/MDM2 domain profile. 273 356 IPR003121 -
Bma03g00573 1313 PANTHER UNCHARACTERIZED 76 552 - -
Bma03g00573 1313 SUPERFAMILY Retrovirus zinc finger-like domains 36 65 IPR036875 GO:0003676|GO:0008270
Bma03g00573 1313 MobiDBLite consensus disorder prediction 1 23 - -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 1197 1287 - -
Bma03g00573 1313 Pfam Plus-3 domain 420 523 IPR004343 GO:0003677
Bma03g00573 1313 MobiDBLite consensus disorder prediction 372 403 - -
Bma03g00573 1313 ProSiteProfiles Zinc finger CCHC-type profile. 49 64 IPR001878 GO:0003676|GO:0008270
Bma03g00573 1313 MobiDBLite consensus disorder prediction 1093 1115 - -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 1128 1149 - -
Bma03g00573 1313 SUPERFAMILY Plus3-like 416 545 IPR036128 GO:0003677
Bma03g00573 1313 MobiDBLite consensus disorder prediction 212 243 - -
Bma03g00573 1313 SMART gyf_5 822 877 IPR003169 GO:0005515
Bma03g00573 1313 MobiDBLite consensus disorder prediction 922 939 - -
Bma03g00573 1313 ProSiteProfiles Zinc finger C3H1-type profile. 1288 1313 IPR000571 GO:0046872
Bma03g00573 1313 Gene3D - 417 546 IPR036128 GO:0003677
Bma03g00573 1313 MobiDBLite consensus disorder prediction 958 1014 - -
Bma03g00573 1313 SUPERFAMILY GYF domain 812 874 IPR035445 -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 1135 1149 - -
Bma03g00573 1313 SUPERFAMILY CCCH zinc finger 1289 1312 IPR036855 GO:0046872
Bma03g00573 1313 Pfam Zinc knuckle 48 64 IPR001878 GO:0003676|GO:0008270
Bma03g00573 1313 MobiDBLite consensus disorder prediction 998 1014 - -
Bma03g00573 1313 CDD GYF 821 876 IPR003169 GO:0005515
Bma03g00573 1313 PANTHER UNCHARACTERIZED 592 1313 - -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 918 939 - -
Bma03g00573 1313 CDD Bbox1 105 131 - -
Bma03g00573 1313 MobiDBLite consensus disorder prediction 695 740 - -
Bma03g00573 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 151 IPR013083 -
Bma03g00573 1313 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 76 552 - -
Bma03g00573 1313 ProSiteProfiles Plus3 domain profile. 415 548 IPR004343 GO:0003677
Bma03g00573 1313 SMART swib_2 274 359 IPR019835 -
Bma03g00573 1313 ProSiteProfiles GYF domain profile. 821 875 IPR003169 GO:0005515
Bma03g00573 1313 MobiDBLite consensus disorder prediction 706 740 - -
Bma03g00573 1313 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Bma03g00573 1313 SMART c2hcfinal6 67 79 IPR001878 GO:0003676|GO:0008270
Bma03g00573 1313 SUPERFAMILY SWIB/MDM2 domain 275 355 IPR036885 -
Bma03g00573 1313 SMART rtf1 415 525 IPR004343 GO:0003677
Bma03g00573 1313 CDD SWIB-MDM2_like 279 354 - -
Bma03g00573 1313 Gene3D - 822 880 IPR035445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00573 - - - jre:109010599 1257.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00573 Bma08g00782 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00481 Bma-Chr3:3738320 Bma03g00573 Bma-Chr3:4786331 3.18E-25 dispersed
Bma03g00573 Bma-Chr3:4786331 Bma06g00105 Bma-Chr6:1504564 8.62E-08 dispersed
Bma03g00573 Bma-Chr3:4786331 Bma03g00971 Bma-Chr3:10303974 4.02E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57003 PF03126 Plus-3 3.20E-23 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00573 Bma_Chr03 FPKM 11.850751 12.655704 11.607998 12.400969 3.234112 2.937328 3.357441 21.596228 21.270069 21.961908