Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00574 ATGGGGGCAGTTGCTGGGGAGGAACTCATGAAATGGGAGAAGATGCAAGGTACAAATTCCCGAGAGGATAAGATTCTTGTTTTAGTGAGGTTGAGGCCATTGAATGAGAAAGAGAATATCGTTCATGAAGTATCAGATTGGGAATGCATTAACGATACCACCATCTTATATCGGAATACATTGCGGGAAGGCTCCCTATTTTCAAATGCCTATACTTTTGATAGAGTGTTCAGAGGTGACTGTTCCACCAAAAAAGTGTATGAGGAAGGAGCTAGAGAAATTGCTCTCTCTGTAGTTAGTGGTATCAATTCTAGTATTTTTGCTTATGGGCAAACAAGCAGTGGGAAGACTTACACTATGAATGGAATCACTGAATATACCGTGGCTGATATATTTGACTATATAAGAAGGCATGAAGAAAGAGCATTTGTTTTGAAGTTCTCAGCCATTGAGATATACAATGAAGCTGTCAGAGATCTCCTAAGTATTGATAATACACCACTTAGGCTGAGAGATGATCCAGAGCGTGGAACTATTGTGGAAAGAGGAACTGAAGAAATTTTGAGGGATTGGAACCATTTGAAAGAGCTTCTCTCTATTTGTGAAGCTCAAAGACGGATAGGGGAGACCACACTGAATGAGAAAAGCTCCAGATCTCACCAACTTATTAGATTGACAATTGAAAGTTCAGCTCGAGAATTTTTAGGAAAAGACAATTCAACGACTCTTGCCGCTAGTGTGAATTTTGTTGATTTGGCTGGCAGTGAGCGTGCATCTCAGGCACTATCAGCTGGGGCAAGATTGAAAGAAGGCTGTCACATAAATCGAAGTTTGCTTACCTTGGGTACTGTTATTCGTAAGCTAAGTAAGGAAAGACATGGGCATATCAATTATAGAGATTCTAAACTGACCCGCATCCTGCAGCCCTGCTTAGGTGGCAATGCTAGAACAGCGATTATCTGCACTTTAAGCCCAGCAAGAAGCCATGTTGAACAAACCAGAAATACGCTTTTGTTCGCATGTTGTGCAAAAGAAGTGACTACTCGGGCACAAGTCAATGTAGTTATGTCTGATAAGGCATTAGTTAAGCATTTGCAGAGAGAACTTGCTAGATTGGAGAGTGACTTCATACCACTGCTGAATTTTTTTGTTGAATTACTATTATTGCAGATGGAAAAGGAGATTAGAGAGCTTACCAGGCAACGGGATCTTGCTCAATCTCGGGTGGAGGATTTGCTTCGTATGGTTGGATTTGATCAAGGCTCAAGTCAGGTACATTCTTATCCCTTGTGCCTTCCATTCCATAACATGTTTGTTCCTGTTGCTACCTACTGTTTTCTTTGTTCTTTCAGGTCAAGAATAACAGTAATTGCGAGTGGCCTTGCGAGTGATGCCTGGGAAGATGAATGTTCAGCATCAGAGTCATCAAGCATGGTCGATTCTCGTGGTCTGAATGTTGGTGCTAGAAGTTTCAACAATTCTCATTATCGTGATGGAGATGGTGAGAGTAATTTTAAAGGTATCTATTTAGGTCTCCAACATAGGAATAAGACCAGAGAATATTCTTTGGCTGATGGAACCTTCTCACTTGAATCTAATGGAAGAAAATTTGTTCAATGTGATTTTGATGACTGCAAGGAAGTTTTATGTATTGATGAGACAGAGGAATCAAGTAGGGACAATAACACTGAATCTCTTGCTTTGTCAACTAATGAAAATGGAGTAACCATGAATTTGACCGATCCTGGTGATGAAAATGTAATAAGTCAACAAATTATGTCTACCCTTGTGAATGGAATCAGGGAAGGGAGGGAGACTCAAAATGGTTTTTCAAATAGTGGATTAGAACATTATCCGGAAGAATCATTTTCTCAGGATGCACCGAGACATATGTCAAGTTCTGGAAGCTTTAAACTAAAAAGAAGCTGGAGCTGTAGGGCTAATCTCATGACAGATTCATCTTCTCCAGGAAGAGCAGAGAGCACACCACCTTGTGGCTATGAGAATGGCTTTCCTGGAAGGCCCGAAGGTTTTGGAAGGAAGATTGCTCCTTTAACTTTTGGTTCTAGTTTTTCGAGATTTGATTCACAATCTTCTTTGGGAAGTGCTCAGAGCATAAAATCTGCAACGAATGAGGACATTACTAGCTTAGATACTTTTGTTACTGGACTGAAGGAAATGGCTAAACTTGAGTATGAGAAGCAACTTGTTGATGATGATCTTGAAACTGAATATTTTCTTAATTTGATCACACCTAATATCTTGTGCTTTTATTATTGGTGTCGCTTGTTGCTGCAGAGGATGGAGACCAGTGGTAAATTACTAAACAATGGGATAGAAGATGTAATTGTTTCTATGCAGGAAGCATCAGAAACATGTCTAGATTGGCCAAGAGAATTTGAAAGGCAGCAGAGAATGATTTGTGAACTGTGGCAAACTTGCAACGTCTCATTAGTCCACCGGACATACTTTTTCCTGCTTATTAAAGGTGATGCAACAGATTCCATTTATGTGGAGGTAGAGCTAAGGAGGTTAAATTTCCTCAAAGAAACATTTTCGCATGGAAATCAGATTGATGGTCGAGGCCGGCCTCAGACTCTGGCTTCAAGCACTAGGGCACTTCGTCGTGAAAGAGAGATGCTGAGTAGGGTGATGCAAAAAAGGTTCTCAGAAGAAGAAAGAAAGATACTTTTCCAGAAATGGGGTATTGCATTGAACTCGAAACGCAGGAGGCTACAGCTTGCCAACTGCCTGTGGAGCAACTGTAAAGACATGAACCACATCACTGAGAGTGCTGCCATTGTTGGAAAGCTTGTGAGGTTTGTGGAGCAGGGACAGGCTCTCAAAGGAATGTTTGGGCTAAGCTTCGCACCCCTACAGACAAAGCGGAGATCTTATACTTGGCAAAACAGTATAGCATCACTTCTATGA 2931 40.98 MGAVAGEELMKWEKMQGTNSREDKILVLVRLRPLNEKENIVHEVSDWECINDTTILYRNTLREGSLFSNAYTFDRVFRGDCSTKKVYEEGAREIALSVVSGINSSIFAYGQTSSGKTYTMNGITEYTVADIFDYIRRHEERAFVLKFSAIEIYNEAVRDLLSIDNTPLRLRDDPERGTIVERGTEEILRDWNHLKELLSICEAQRRIGETTLNEKSSRSHQLIRLTIESSAREFLGKDNSTTLAASVNFVDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSKERHGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTRAQVNVVMSDKALVKHLQRELARLESDFIPLLNFFVELLLLQMEKEIRELTRQRDLAQSRVEDLLRMVGFDQGSSQVHSYPLCLPFHNMFVPVATYCFLCSFRSRITVIASGLASDAWEDECSASESSSMVDSRGLNVGARSFNNSHYRDGDGESNFKGIYLGLQHRNKTREYSLADGTFSLESNGRKFVQCDFDDCKEVLCIDETEESSRDNNTESLALSTNENGVTMNLTDPGDENVISQQIMSTLVNGIREGRETQNGFSNSGLEHYPEESFSQDAPRHMSSSGSFKLKRSWSCRANLMTDSSSPGRAESTPPCGYENGFPGRPEGFGRKIAPLTFGSSFSRFDSQSSLGSAQSIKSATNEDITSLDTFVTGLKEMAKLEYEKQLVDDDLETEYFLNLITPNILCFYYWCRLLLQRMETSGKLLNNGIEDVIVSMQEASETCLDWPREFERQQRMICELWQTCNVSLVHRTYFFLLIKGDATDSIYVEVELRRLNFLKETFSHGNQIDGRGRPQTLASSTRALRREREMLSRVMQKRFSEEERKILFQKWGIALNSKRRRLQLANCLWSNCKDMNHITESAAIVGKLVRFVEQGQALKGMFGLSFAPLQTKRRSYTWQNSIASLL 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4810665 4816462 + Bma016864.2 Bma03g00574 79247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00574 976 Pfam Domain of unknown function (DUF3490) 799 958 IPR021881 -
Bma03g00574 976 PANTHER KINESIN-LIKE PROTEIN KIN-7F 6 425 - -
Bma03g00574 976 Coils Coil 355 375 - -
Bma03g00574 976 PANTHER KINESIN-LIKE PROTEIN KIN-7F 460 743 - -
Bma03g00574 976 PANTHER CENTROMERE PROTEIN E 776 976 - -
Bma03g00574 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 375 IPR027417 -
Bma03g00574 976 MobiDBLite consensus disorder prediction 604 635 - -
Bma03g00574 976 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bma03g00574 976 CDD KISc_CENP_E 24 346 - -
Bma03g00574 976 Gene3D Kinesin motor domain 15 376 IPR036961 -
Bma03g00574 976 PANTHER KINESIN-LIKE PROTEIN KIN-7F 776 976 - -
Bma03g00574 976 PANTHER CENTROMERE PROTEIN E 6 425 - -
Bma03g00574 976 PANTHER CENTROMERE PROTEIN E 460 743 - -
Bma03g00574 976 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 Coils Coil 388 415 - -
Bma03g00574 976 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma03g00574 976 MobiDBLite consensus disorder prediction 604 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00574 K11498 CENPE; centromeric protein E - zju:107426777 1161.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00574 Bma-Chr3:4810665 Bma06g00050 Bma-Chr6:839137 7.91E-39 dispersed
Bma03g00568 Bma-Chr3:4717951 Bma03g00574 Bma-Chr3:4810665 1.67E-40 proximal
Bma01g00738 Bma-Chr1:6758247 Bma03g00574 Bma-Chr3:4810665 8.28E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00574 Bma_Chr03 FPKM 5.291667 4.7988 0.0 0.0 0.756161 0.0 0.562272 7.085467 3.758824 6.25851