Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00575 ATGATAATATGCTGTCACACAATTCTGTTCGATCGGAGGGAGAGAGGGAGAGAGGGAGAGATGTCAATTGCAGGGTACGTAGCTCGGAGAGCAGCACAGAAGGAAAGAGTGAGGATCTTATACAGGCGAGCCCTCAAAGACACACTTAATTGGGCCGTCCATCGTCATCTCTTCTACCAGGATGCTTCCGACTTGCGCGAGAGATTTGATGCTAACAAGCATGTGGAAGATCTGGATACAATTGATAGACTGATAGAAGATGGGGAAGCATCGTATAACAAATGGCGGCACCCTGATCCATATATTGGTAAATATCAAGCATTTTTGTGA 330 45.76 MIICCHTILFDRRERGREGEMSIAGYVARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLRERFDANKHVEDLDTIDRLIEDGEASYNKWRHPDPYIGKYQAFL 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4817054 4818255 + Bma016865.1 Bma03g00575 79248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00575 109 PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 9 22 102 - -
Bma03g00575 109 CDD Complex1_LYR_NDUFB9_LYRM3 33 102 IPR045292 -
Bma03g00575 109 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT 22 102 IPR033034 GO:0006120
Bma03g00575 109 Pfam Complex 1 protein (LYR family) 36 89 IPR008011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00575 K03965 NDUFB9; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9 - jre:109006539 159.844
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g47 . . . . . . . . . . Cma02g00361 Cma20g00806 Car02g00228 Car20g00691 . . . . . . . . . . . . . . . . . Cone12ag1190 Cone8ag1237 . . Lsi10g00421 . Chy11g00331 . Blo04g00542 . . Bda14g00582 Bpe15g00839 . Bma03g00575 . Sed01g0255 Cmo02g00364 Cmo20g00814 . . . . Cpe16g00279 Cpe05g01295 Bhi10g01933 Tan05g1231 Cmetu11g1579 . Hepe08g0968 . . . . . . . . . . Csa02g01313 . Cme11g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008255 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00575 Bma_Chr03 FPKM 18.246672 20.627289 14.481639 13.096918 15.629966 17.476555 17.445683 15.817523 14.988878 17.583033