Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00578 ATGGACGAGTTAAATCAGGCGGAATTAGTTGATGACCTCAAGGTATCGGTAGAGCCAATGGCGGAGGTCATCTCGAATTCAGCTCAGGCTACGCCGGAGGAGCTGGTGGAGAAGTCCATAGCTCCAGTGAAAGCGCAGTTTCTTCGTCCTCACGCGAGGTCATCGGTTAGCAATCGAGTTGATAGTGTTTCTGTTGCCAAGGAAAACGGTGATGATAAGACTGCCAAGTCGAGCTTAGTGAAAGAAAAGAAGTCCAAGCGTCAACTCAAACGAGAACGCCGTCAGGAACAAAAATCAGCTCTCCACATCTGTCCCAAAGTAGCAAAGACAGGAGATGTTAGTTCGTGCCCTTATAAAGACAAATGTCGATTCAGTCATGACGTTGAAGCCTTTAACGCTCAGAAACCAGCTGATATTGGGGAAGAATGTCCATTCACCAGTGCTGAGGAGCTATGCCCTTATGGCTTGGCTTGTAGATTCTCAGGTGGTCATAAGGATGATCCTTTTAATGAAACGCTAGTTTCTTGCAGAAAAAAATCTGAAGTAAATGGATTGAGTAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAAATGAGCTTCCCAAAGGCAGATTCAAAACTCAAAGATCTTGGACTCCTGGGCAAGTCAAAACTGAAAGTGATAGAAAAGGATAAAAAAGAAACAGTGGTCAATAACTGTTCTGTTTCTGATGAAAATGGCTGTAACGAAGTAGAAAATGACTTCGATATAAAGGTCGAATTCTCTGCCGAAGGTTCAGAGGAGATTAGTGAGAGTGGTTTGGAGGAAACATGTGTATTTGATGGACCTCCTCCATTGAAGAAGTCAAAATCTTGCCCTGAAGAGAAATGCCTTTCTGATCAAACAGTTGATAGAGGTGGTCCCTCACTTCTATTTGTTTTTGTTTTCTCAGGTTCAAATACTGTAGAGATAAACAAACTTCCCGGTGATGATGGGATCCTAGAAGATGGTGCACTTCTGAAATTACACCCACGTGAAAGGAAGCTTATAGATTTCAGAGATAAGCTGTATCTTGCTCCTTTGACCACTGTGGGAAATTTACCTTTTCGAAGGGTTTGCAAAAGTTTAGGGGCAGATGTAACATGTGGTGAAATGGCAATGTGTACTAATATTTTGCAGGGCCAAGCGTCAGAATGGGCATTGCTGAGACGTCATTCTTCTGAGGATCTGTTTGGTGTACAGATTTGTGGCTCATTTCCAGATACAGTGGCTCGCACTGTTGAGCTTATAGATCAGGAATGTACAGTAGACTTCATTGACATAAATATGGGGTGCCCTATTGACATTGTTGTGAACAAGGGTGCTGGATCAGCACTTCTTACGAAACCAATGCGTATGAAAAGCATAGTAGAAGCAGCTTCTGGTGTGATGTCCAGACCTTTAACAATTAAGGTAAGAACAGGTTATTTTGAAGGGAAGAATCGCATTGATTCTCTCATTGCTGAAATGAGTTCCTGGGGAATGAGTGCAGTGACAATCCATGGGCGAACTCGCCAGCAGCGTTATAGCAAGCTTGCTGATTGGGATTACATTTACCAGTGTGCCAAAAAGAGTTCTGATTCTCTTCAAGTCATTGGAAATGGGGATGTATTTTCATATATAGACTGGAATAAGAGTAGGGCTGAGTGCCCAAAGCTCTCAACGTGCATGATTGCTAGAGGTGCATTAATTAAGCCTTGGTTATTTACAGAAATTAAGGAACAAAGGCATTGGGACATTAGCTCAGGAGAGCGACTTAACATCTTGAAAGATTTTGTTCGTTTTGGACTTCAACACTGGGGTTCTGACACGAAAGGAGTGGAGACAACAAGGCGTTTCTTGTTGGAATGGCTTAGCTACACATGTAGATACGTACCTGTCGGTCTTCTAGAGGTCATCCCTCAACGTCTGAACTGGCGTCCACCTTCATATTCTGGTCGGGATGATCTGGAGACGCAAATGGCTTCCGATTCAGCAGCTGATTGGGTTAGGATCTCGGAAATGTTGCTTGGCAAGGTTCCCGATGGCTTCAAATTCGCACCTAAGCACAAGTCCAACGCATACGACCGAGCTGAGAATGGCTGA 2103 43.41 MDELNQAELVDDLKVSVEPMAEVISNSAQATPEELVEKSIAPVKAQFLRPHARSSVSNRVDSVSVAKENGDDKTAKSSLVKEKKSKRQLKRERRQEQKSALHICPKVAKTGDVSSCPYKDKCRFSHDVEAFNAQKPADIGEECPFTSAEELCPYGLACRFSGGHKDDPFNETLVSCRKKSEVNGLSKDVQKLLWKNKMSFPKADSKLKDLGLLGKSKLKVIEKDKKETVVNNCSVSDENGCNEVENDFDIKVEFSAEGSEEISESGLEETCVFDGPPPLKKSKSCPEEKCLSDQTVDRGGPSLLFVFVFSGSNTVEINKLPGDDGILEDGALLKLHPRERKLIDFRDKLYLAPLTTVGNLPFRRVCKSLGADVTCGEMAMCTNILQGQASEWALLRRHSSEDLFGVQICGSFPDTVARTVELIDQECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEAASGVMSRPLTIKVRTGYFEGKNRIDSLIAEMSSWGMSAVTIHGRTRQQRYSKLADWDYIYQCAKKSSDSLQVIGNGDVFSYIDWNKSRAECPKLSTCMIARGALIKPWLFTEIKEQRHWDISSGERLNILKDFVRFGLQHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLEVIPQRLNWRPPSYSGRDDLETQMASDSAADWVRISEMLLGKVPDGFKFAPKHKSNAYDRAENG 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4829279 4834080 + Bma016868.1 Bma03g00578 79251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00578 700 Gene3D Aldolase class I 344 586 IPR013785 -
Bma03g00578 700 CDD DUS_like_FMN 348 583 IPR035587 -
Bma03g00578 700 Pfam Dihydrouridine synthase (Dus) 351 586 IPR035587 -
Bma03g00578 700 MobiDBLite consensus disorder prediction 65 82 - -
Bma03g00578 700 Gene3D - 93 175 - -
Bma03g00578 700 Coils Coil 79 99 - -
Bma03g00578 700 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 37 700 - -
Bma03g00578 700 MobiDBLite consensus disorder prediction 51 97 - -
Bma03g00578 700 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 37 700 - -
Bma03g00578 700 SUPERFAMILY FMN-linked oxidoreductases 348 661 - -
Bma03g00578 700 ProSiteProfiles Zinc finger C3H1-type profile. 103 129 IPR000571 GO:0046872
Bma03g00578 700 ProSitePatterns Uncharacterized protein family UPF0034 signature. 432 450 IPR018517 GO:0008033|GO:0017150|GO:0050660
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00578 K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89] - csv:101215945 946.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00578 Bma-Chr3:4829279 Bma09g00154 Bma-Chr9:5266355 5.34E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g58 . . . . . . . . Cmo19g00714 . . . . . Sed05g2278 . Cpe15g00570 Bhi05g01772 Tan02g0739 Cmetu01g1464 . Hepe02g0458 . . Cla02g00473 Cam02g0479 Cec02g0481 Cco02g0486 Clacu02g0483 Cmu02g0478 Cre02g0813 Cone12ag1198 . . . . Csa07g00053 . Cme01g01317 Blo04g00545 . . Bda14g00584 Bpe15g00836 . Bma03g00578 . . . . . Cma19g00705 . Car19g00544 . . . . . . . . . . . . . . . . Lsi11g01152 . Chy01g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011659 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57005 PF01207 Dus 1.70E-51 CL0036 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00578 Bma_Chr03 FPKM 0.341536 0.31114 1.895832 1.90197 10.294402 12.532984 12.473838 2.381072 1.951233 2.260824