Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00585 ATGTCCCAACTCCACTACATTGCTTATTACTCTAGACCACAAGCTTTAGCAGATATCGTTTCTTATCTATATAAACCATACCCTCTCACTCTTTCTCACAGCCAACACGAGCCTTCACATTTCCAGTCCACAGCTTCTCTCAAATCTCAAATTCTCAAAGAAAGGCAGAACAACATGGCAGTTCGAAGTGCTATTCTCGCAGCAAAATTCCTTCGTCGAAGTGCTGTGACAGGACAAAAGGCAACATCATTAGACGTTCCAAAGGGCTTCTTTGCAGTCTATGTAGGAGAGACCCTGAAGAAGAGATATGTGGTTCCAGTGTCGTATTTGAACCATCCTTCGTTCCAATATTTACTCACAAAAGCAGAAGAAGAATATGGGTTTACTCATCCTATGGGCGGTTTGACAATTCCATGTAGAGAAGAAACATTCTTTGAAGTAACTTCTCGATTGGGGAGTTCTTAA 465 41.51 MSQLHYIAYYSRPQALADIVSYLYKPYPLTLSHSQHEPSHFQSTASLKSQILKERQNNMAVRSAILAAKFLRRSAVTGQKATSLDVPKGFFAVYVGETLKKRYVVPVSYLNHPSFQYLLTKAEEEYGFTHPMGGLTIPCREETFFEVTSRLGSS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4902944 4903408 + Bma016877.1 Bma03g00585 79258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00585 154 PANTHER SAUR FAMILY PROTEIN 63 152 - -
Bma03g00585 154 Pfam Auxin responsive protein 69 150 IPR003676 GO:0009733
Bma03g00585 154 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 63 152 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00585 K14488 SAUR; SAUR family protein - pvy:116143738 132.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00583 Bma-Chr3:4898887 Bma03g00585 Bma-Chr3:4902944 1.20E-23 dispersed
Bma03g00585 Bma-Chr3:4902944 Bma08g00770 Bma-Chr8:44849080 1.41E-46 dispersed
Bma14g00027 Bma-Chr14:366588 Bma03g00585 Bma-Chr3:4902944 1.46E-13 dispersed
Bma14g00030 Bma-Chr14:390952 Bma03g00585 Bma-Chr3:4902944 1.02E-14 dispersed
Bma15g00950 Bma-Chr15:35699755 Bma03g00585 Bma-Chr3:4902944 4.22E-24 dispersed
Bma15g00966 Bma-Chr15:37190850 Bma03g00585 Bma-Chr3:4902944 5.79E-24 dispersed
Bma03g00584 Bma-Chr3:4901965 Bma03g00585 Bma-Chr3:4902944 8.81E-28 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g74 . . . . . . . . . Cmo11g01711 . Cma20g00781 . . Sed04g3883 . . Bhi05g01763 Tan02g0723 Cmetu01g1922 . . . . Cla02g00467 Cam02g0474 Cec02g0474 . Clacu02g0478 Cmu02g0473 Cre02g0804 . Cone8ag1253 . . . Csa07g00059 . Cme01g01304 . . . . . . Bma03g00585 . . . Cmo20g00785 Cma11g01409 Cma19g00711 . . . . . . . . . . . . . . . . . . . Csa02g01334 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00585 Bma_Chr03 FPKM 1.484681 1.729239 3.290674 3.135885 6.98889 5.493249 6.816241 7.411123 7.100992 7.183956