Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00587 ATGGGCATCTCTTTGCTGGGTTCTAAGAAGATTCTTAGGCAGATTGTTTCATCACCTGGAAATGCACAAGTGCCAAAGGGTCATTTTGTAGTTTATGTTGGAGAAACCGAAAAGAAGCGGTTCTTCGTCCCGATTTCGTATCTGAGACAGCCCTCGTTCCAAATGTTGTTAAGTCAAGCTGAAGAAGAGTTTGGATATGATCATCCGATGGGGGGTCTTACTTTTGCTTGCAGAGAAGAAGTCTTCTTTAGCAGTTTAATGAGAAGCAACTAG 273 42.49 MGISLLGSKKILRQIVSSPGNAQVPKGHFVVYVGETEKKRFFVPISYLRQPSFQMLLSQAEEEFGYDHPMGGLTFACREEVFFSSLMRSN 90
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4906067 4906339 - Bma016879.1 Bma03g00587 79260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00587 90 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 83 IPR003676 GO:0009733
Bma03g00587 90 PANTHER - 12 83 - -
Bma03g00587 90 Pfam Auxin responsive protein 18 87 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00587 K14488 SAUR; SAUR family protein - vvi:100250384 118.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00587 Bma-Chr3:4906067 Bma08g00771 Bma-Chr8:44853609 1.84E-32 dispersed
Bma03g00587 Bma-Chr3:4906067 Bma03g00588 Bma-Chr3:4908453 5.45E-29 tandem
Bma03g00587 Bma-Chr3:4906067 Bma08g00768 Bma-Chr8:44711647 1.53E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g77 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00587 . . . . . Cma19g00712 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014104 3 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 1 0 0 1 1 0 0 0 1 1 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00587 Bma_Chr03 FPKM 6.35134 6.445413 1.018789 0.643373 0.0 0.0 0.0 123.128075 125.837708 113.556679