Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00590 ATGGACGCGCCAACATCTCTACTGAAAAGCGGTGGTAATGAGGAGGTTCTGGACGGTTCCAATATAATGGAGTTGGTTGGGAACCAGGACGTCTTTAACCCTTTCGTGGACCATAAGTTCCGTGACTTGGATAGGGACGGAGACGGTAAGCTCTCTGTGAAAGAACTCCAACCTGCTGTCGCTGATATCGGCGCCGCTCTCGGACTTCCTGCTCAGGGCTCTTCACCGGACACTGATCGAATCTACTCCGAGGTGTTGAATGAATTCACCAAGGGCGGACAAGAAAAAGTGAGCGTGATGAGCAATATTGTCGAGCCAACAGTTCGTTCTTGCGAAACTCGGGATTGGAAGGAAACTGTTTCTCAGGGGACTTTCTTGGCTGAATTCAAAAGGGTTGGAGAGCGATTGGCTCAAAGTCTTAAAGAACATCCCGTGATCGTTGCTCATACCGAAAACACCTTCGATGGTAGTGGCATCCGGAAATTGTTGTCTAACAAGTTCGAGCTTGACAAGTCACTCAATTCAGTTCTCGAGCGTGTGCCGAGAGATCGACAGGGAAAAATGTCTAAAGATTATCTGAAAAACGTGCTGGAAGTGTTGGCCCCATCAGCTGGCTTACCACCACTAGGCGCAGTGGATGAGATTGACAAGGTGGTTTGCGATGCGTTGAAGATGACCGAAGCTAAAGGTGCCTGCATTGCTGATGTATATCTTGCATCTGATTGTGCTTTCCATGATAGAAGGATACCTATACCAGTTTTTGATTTGTATGGAGTTGGTTTGCGGCAGGCACTCTCGACTCCAAATCTTATAAAAGAACTAAACCTAAAGAATCCTTCATTGTTTTTCTGCATTTCTCAGGTTGGCAAATTGTCTACAGGAGACTCTTTAGATATGTGTTCACAAGATGAGGAATCAATTGTAGCAAATGATGCCACTATCAAAGACATGGAGGGAGCTGCCGTTGCCTATGTGGCAGATCTCTTCAAAATTCCTGTTATATTCATGAAAGCGGTGACCGACATTGTGGATGGAGAAAAGCCTGCCGCAGAGGAATTTTTGAAAAATCTGGCTATAGTGGCTGCTGCACTGGATCAAGCAGTCACACAAGTAATTGATTATATCAGTGGAAAGTGCATCTCTGATCTTTGA 1152 45.75 MDAPTSLLKSGGNEEVLDGSNIMELVGNQDVFNPFVDHKFRDLDRDGDGKLSVKELQPAVADIGAALGLPAQGSSPDTDRIYSEVLNEFTKGGQEKVSVMSNIVEPTVRSCETRDWKETVSQGTFLAEFKRVGERLAQSLKEHPVIVAHTENTFDGSGIRKLLSNKFELDKSLNSVLERVPRDRQGKMSKDYLKNVLEVLAPSAGLPPLGAVDEIDKVVCDALKMTEAKGACIADVYLASDCAFHDRRIPIPVFDLYGVGLRQALSTPNLIKELNLKNPSLFFCISQVGKLSTGDSLDMCSQDEESIVANDATIKDMEGAAVAYVADLFKIPVIFMKAVTDIVDGEKPAAEEFLKNLAIVAAALDQAVTQVIDYISGKCISDL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4911824 4917350 + Bma016882.1 Bma03g00590 79263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00590 383 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 10 98 - -
Bma03g00590 383 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 98 229 - -
Bma03g00590 383 SUPERFAMILY Purine and uridine phosphorylases 230 368 IPR035994 GO:0003824|GO:0009116
Bma03g00590 383 Pfam Phosphorylase superfamily 231 372 IPR000845 GO:0003824|GO:0009116
Bma03g00590 383 Gene3D Nucleoside phosphorylase domain 219 383 IPR035994 GO:0003824|GO:0009116
Bma03g00590 383 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN 10 98 - -
Bma03g00590 383 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN 98 229 - -
Bma03g00590 383 ProSitePatterns EF-hand calcium-binding domain. 44 56 IPR018247 -
Bma03g00590 383 ProSiteProfiles EF-hand calcium-binding domain profile. 31 66 IPR002048 GO:0005509
Bma03g00590 383 SUPERFAMILY EF-hand 39 200 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00590 K01244 MTN; 5'-methylthioadenosine nucleosidase [EC:3.2.2.16] - dcr:108204741 244.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00590 Bma-Chr3:4911824 Bma08g00767 Bma-Chr8:44705921 1.53E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g93 . . . . . . . . Cmo19g00731 Cmo11g01721 . . . . . . . . . . . . . . . . . . . . . Cone12ag1206 Cone8ag1258 . . . . . . . . Bda15g01046 . . . Bma03g00590 . . . . Cma11g01400 Cma19g00722 . Car19g00549 . . . . . . . . . . . . . . . . Lsi11g01177 . Chy01g00700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012224 2 1 1 1 0 1 2 1 1 1 0 1 2 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00590 Bma_Chr03 FPKM 8.707692 8.192895 6.533476 7.285695 15.515341 17.507458 15.366473 11.070875 11.540018 10.315258