Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00597 ATGGCTACCATTTCAGCACCAAGCTTGTCCTCGATGTTGCTCTTCATTGCCATAGCCTTCTTTTCATTTGGGCCTGACGCCATCAATGCCAAAACATGGCTGAATATTAGAGAAGCTACCATAAGCAATCTCCAAGTAGCTTTGAAGCAAAATCAGTTGACTTCGAGGCAACTGGTGGAGTTTTACCTCGGAGAAATCGACAGACTAAACCCAGTTCTTAAGGGGATCATAGAGGTTAACCCAGATGTACTCTGTCAAGCTGATAAAGCCGACAGATATCGCAAAGCTTATAGCCATAGAAATCTTAATGGGTTGCATGGAATTCCTATTTTACTCAAAGACAACATCGGAACAAAGGATAAGCTCAACACCACCGCTGGCTCCTTCGCCCTGCTCGGATCAGTATTGCCTCGTGATTCAGGCGTCGTAAACAAGTTGAGGAAAGCCGGCGCTATCATTCTTGGCAAGGCCAGCTTGAGCGAGTGGGCTAATTTCAGGTCTCTCACTGCGCCTAGTGGTCTGAGCGCCAGAGGTGGCCAAGGAAAGAATCCATATGTTTTATCAGCTTCTCCGTGTGGATCGAGCAGCGGGCCGGCTATATCGGTGGCGGCAAATATGGTAGCCGTTTCGGTCGGGACCGAGACCGATGGTTCGATCATATGCCCTGCTAGTTTTAACTCAGTGGTCGGCGTTAAACCAACAGTCGGTCTCACAAGTCGAGCAGGTGTCATTCCAGTGTCTCCTAGACAGGATACAATTGGGCCGATCTGCAGGACTGTATCAGACGCTGTTTCAGTTCTTGACGCCATTGTAGGGTTGGACTACGAGGATGAAGCAACCAGAGAGGCTTCGAAGTATATTCCAAAGGGAGGATACAGACAGTTCCTCAATTACAATGGTCTCGCAGGGAAAAGACTTGGGATAGTGAGAAACCCTTTCTTTAACTCTCTCAACGCTGCAACTTCTAATGCTTTTGAGTATCATTTCGAGACAATGCAGAGAAAAGGTGCGATTTTGGTGGATAATTTGGAAATAGAAAACCTTGATGTGATCTTGAACGTAACAGCGAGTGGAGAAGCCGTTGCTTTGCTGGCCGAGTTCAAACTGGCACTGAACAAGTATCTGCAAGAGCTGGTGGTCTCTCCTGTGCGATCCTTGGCTGATGTAATAGCATTCAACGACAGAAACCCAGATTTGGAACTCCTGAAAACATTTGGGCAAGAAGTATTTCTAGCGGCGCAGGCCACAGACGGGATTGGCGCACTAGAAAAGGCTGCGTTGGGAAAGCTAGCTAAACTCAATGCTGGTGGGTTTGAGAAGGTGATGATGGAGAATGATTTAGACGCATTAGTGACTCCTAATGCCGACATCGCTTCTGTTCTTGCGATTGGTGGATTCCCAGGAATCAGCGTTCCGGCTGGATATGAAGCTGACGGTGTTCCTTTCGGCATTTGTTTTGGCGGATTAAAGGGTTCGGAGCCAAAGCTTATTGAATTAGCTTATGGGTTTGAGCAAGCTACAAAGATCAGAATACCTCCTTCTTTCAAACCTTAA 1554 47.17 MATISAPSLSSMLLFIAIAFFSFGPDAINAKTWLNIREATISNLQVALKQNQLTSRQLVEFYLGEIDRLNPVLKGIIEVNPDVLCQADKADRYRKAYSHRNLNGLHGIPILLKDNIGTKDKLNTTAGSFALLGSVLPRDSGVVNKLRKAGAIILGKASLSEWANFRSLTAPSGLSARGGQGKNPYVLSASPCGSSSGPAISVAANMVAVSVGTETDGSIICPASFNSVVGVKPTVGLTSRAGVIPVSPRQDTIGPICRTVSDAVSVLDAIVGLDYEDEATREASKYIPKGGYRQFLNYNGLAGKRLGIVRNPFFNSLNAATSNAFEYHFETMQRKGAILVDNLEIENLDVILNVTASGEAVALLAEFKLALNKYLQELVVSPVRSLADVIAFNDRNPDLELLKTFGQEVFLAAQATDGIGALEKAALGKLAKLNAGGFEKVMMENDLDALVTPNADIASVLAIGGFPGISVPAGYEADGVPFGICFGGLKGSEPKLIELAYGFEQATKIRIPPSFKP 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4938178 4940108 + Bma016888.1 Bma03g00597 79270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00597 517 SUPERFAMILY Amidase signature (AS) enzymes 35 514 IPR036928 -
Bma03g00597 517 Gene3D Amidase signature (AS) domain 26 515 IPR036928 -
Bma03g00597 517 Pfam Amidase 58 456 IPR023631 -
Bma03g00597 517 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 28 517 - -
Bma03g00597 517 PANTHER AMIDASE 28 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00597 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101204792 721.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00597 Bma-Chr3:4938178 Bma03g01339 Bma-Chr3:27885403 2.11E-28 dispersed
Bma03g00597 Bma-Chr3:4938178 Bma08g00763 Bma-Chr8:44621086 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g123 . . . . . . . . Cmo19g00736 Cmo11g01729 . . . . . . Cpe15g00582 . . . . . . . . . . . . . . Cone12ag1217 Cone8ag1270 . . . Csa07g00085 Chy11g00286 . Blo04g00557 . . . . . Bma03g00597 . . . . . . . Car19g00556 . . Bhi10g01881 Tan05g1178 . . Hepe08g0269 . . Cla02g01140 Cam02g1217 Cec02g1224 Cco02g1270 Clacu02g1199 Cmu02g1168 Cre02g1475 . Csa02g01363 . Cme11g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00597 Bma_Chr03 FPKM 47.684105 52.997967 22.748449 24.039722 28.857212 28.384901 31.195873 19.838207 21.281368 20.741629