Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00599 ATGGAAAATGGAGCCGATATTGTTGATGTCTTGCACACGGGGGACACAAAGAGTTTGGGGACTTCTGAGGAGAGGGTAGAGGAGGGAGTTGTTTTTGAGGATGCAATGAATGCAGAGGAAGATTTTCTGGAACAGAGGATGAATTCTGACTCTGCAGACTCCGTTGTTAAGGAAGAAGGAGAGGAGCAACCAGCTGGTGATTCCAAACATAGCATGGTTTATGAGGATCCTAATTCTGTTTATGAGGTTGATAAATTTGAAGAGGCAACGGATGGTTCGAGTTTGACGTCGCAAAATAGGGAGGAAGTCAATGATGAAGGGGAACCCTCCTTAATCACTACAAAGGAGGAAGTTTATGATGATGGAGCTTCTGTTCTAGAGCCCATAGCGACTCGTGTCGTTGATGAGGAAGGTTCTGAGGTGAAAGTAAAGTCTGCATTCGATGAGTTGCCAAATGGAAGTAGTCACGAAGATGGGGGAAAGGAATTTTCTGTAGTTGGTGCTAGGAATGAGGGTGAAATTTTGGATGAGGATGAGACTGATGATGTTAAATATAGTGTAATGATTTCTGAGTCAGGAGTTGACGTTGTTAATGAGAAGTTAGAGGAGCCAGTGAGTATGGATGAGACTGCCAATAGTACAGGTGCAGGCAAGGAAGGTGAGGATGATCGTTCTACTCATCGAGTTACTGGGTCTAATAGGGAGATTCTTGATGAAAATGAAGTGAAGAAAGAAAAAGTGAATTTGGACTGTGATGAAGAAACAACTGGGGAGTTACAAAATACTAATGGTGGCCATCAGGTAGAGATTCTAGACAATAAAAGTGAAAAACCAAATGATGACTGTAACCTTACCAATCCTGATGCAAAATTCGCTGATAAGGAAAGTTGGGAACTTGAAGATTCCACTGCCAGTTCTAAATCGAGGTCTGAAAATGTGGAAGGTGATGATTTGAGTTATTCTTCAGCTCAAAAAGAACATATGGATTACAATGTCAAGGAAGTGAATAATGCTTCAGTCGCGGTGGATTCAGGTGATAATGGAGACACATCAGATGCTTCAACAGTGAATTTAGAACGTAATGGGCTAACAATGTCGGAAGTGAAATATAATTCAGCTGATCTGCCTAAAACAGTGGATATAACAGAGGTGGAGGTCCAAAATGGAACACTGTCTCCTCCTAATGTAAATAATGAAAAGACAGTGAAGATACAGGATGTTAAAACTGGTTTGATAGCAACAGATAACCACATCGATAAAAGTCAGCAACTTGATGATTACGACAAAAGTAGTATTAGTGTTGAGAAACTTGAGAAGGCAGAGGGAAAGGTTCAAGAAGAAAATCAGGGCACTCGCCCAAATACAGATGTAGGAATACGTCCTTCACCCAATTTACCTTTGTCATCTAAAAAAGTTTCAAATCCTGCCCCTTCTCCTGCTCGTCCTGCTGGTCTTGGGCGTGCTGCTCCATTATTAGAGCCTGCTCTGCGGATGGCACAACAGCCCCGTGTGAATGGTAATTCTTCACATATGCAGTCTCAACAAGTTGAGGACTCTTCAAATGGAGAGGCTGAGGAGAATGATGAGACACGTGAAAAACTCCAAATGATCAGGGTGAAATTTCTGCGCCTTGCTTATAGGCTTGGTCAGACTCCACATAACGTTGTTGTGGCTCAGGTTTTGTATCGTCTTGGCTTAGCTGAGCAGCTGCAAGGAAGAAGTGGAGGCCGGGTCGGTGCCTTCAGTTTTGATCGTGCTAGTGCCATGGCAGAGCAGCTTGAGGCAGCTGGGCAAGAGCCACTTGATTTTTCTTGCACAATTATGGTTTTGGGAAAGACAGGCGTTGGTAAAAGTGCAACCATTAATTCTATATTCGATGAAGTTAAGTTTGGCATAGATGCTTTTCAAATTGGTACAAAGAAAGTTCAGGATGTTGTGGGTACTGTGCAGGGTATTAAGGTGCGTGTCATTGACACGCCAGGCCTTCTGTCCTCGTGGTCAGATCAGCGCCAGAATGAAAAGATTCTCCTTTCTGTTAAGCGCCTTATCAAGAAAACACCCCCAGATATTGTATTGTATCTAGACAGGTTGGACGTGCAGAACAGGGATTTTAGTGACATGCCACTCTTGCGGACTATCACTGACATATTTGGCCCGTCCATTTGGTTTAATGCAATCGTGGTATTCACTCATGCAGCATCAGCCCCTCCTGATGGCCCTAATGGTACTGCTTCTAGCTATGACATGTTTGTTACTCAGCGCTCTCATGTTGTCCAGCAAGCCATTCGTCAGGCAGCTGGTGATATGCGGCTCATGAATCCTGTGTCCCTTGTGGAGAACCACTCCGCATGCAGAACAAACAGAGCTGGACAAAGAGTTTTGCCAAACGGTCAGGTATGGAAACCTCATTTGTTACTTCTGTCATTTGCATCAAAGATCCTGGCTGAAGCAAATGCACTGTTGAAGCTTCAAGACAGTCCTCCTGGAAGGCCTTTCACAGCTCGATCAAGGGCTCCTCCCTTACCTTTTCTCCTCTCGTCCCTTCTTCAATCGAGACCACAGGTTAAATTGCCTGAGGAACAGTTTGCTGATGGGGATGATATTGAAGATGAATTGGATGAATCTTCTGATTCTGAAGAAGAATCAGAATACGATGAGTTGCCACCATTTAAACGACTGACGAAGGCTCAAGTCTCGAAACTTTCCAAGGTACAGAAAAAGGCATATTTTGACGAATTAGAATATAGGGAGAAACTGTTCATGAAGAAACAACTAAAAGAAGAGAAAAGGCGGCGAAAAATGATGAAGAAGATGGCAGCTCAGATTAGGGATCTGCCAAGTGACTACACTGAGAACGTAGAAGAAGAAAGTAATGGTGCAGCATCAGTGCCAGTTCCCATGCCAGATTTGGCATTACCTGCTTCATTTGATTCTGATAATCCTACTCATCGGTATCGATATCTTGATTCGTCCAACCAATGGCTAATAAGGCCTGTACTGGAAACACATGGTTGGGACCATGATGTTGGTTATGAAGGTATAAATGTAGAAAAGCTCTTTGTCGTCAAAGAGAGAATTCCCTTATCCTTTTCGGGTCAGGTTACCAAGGATAAGAAGGACGCCAACCTTCAGATGGAAATGACAAGTTCAATAAAGCATGGAGAAGGAAAAGCAACTTCTTTTGGTTTTGATATGCAAACTGTTGGGAAGGACTTGGCGTACACTCTTCGTGGTGAGAGGATATTTTGTAATTTTTGGAAAAATAAGGCTATTGCTGGTATTTCAGCCACTCTTTTAGGTGATACTTTGTCTGGTGGAGTGAAAGTAGAAGACAAATTGATTGCCAGTAAAAGATTCAGGTTGGTTATAGCCGGAGGTGCAATGACCAGTCGAGGAGATGTTGCTTATGGAGGCAGTCTGGAGGCTCAATTAAGGGACAAAGAGTATCCTTTGGGTCGATCACTATCAACTCTTGGGCTATCAGTTATGGATTGGCATGGAGATCTTGCCATTGGATGCAATTTACAGTCTCAAATTCCCATCGGACGATCAACAACTCTGATAGGTAGAGCCAACTTGAATAATAGGGGGGCAGGGCAAGTGAGCATTCGCTTAAACAGCTCTGAACAGCTTCAAATAGCATTACTCGGCCTTGTTCCTCTCGTGAAGAAGATTTTTGGTTATCATCAGCAGTTGTAG 3699 43.31 MENGADIVDVLHTGDTKSLGTSEERVEEGVVFEDAMNAEEDFLEQRMNSDSADSVVKEEGEEQPAGDSKHSMVYEDPNSVYEVDKFEEATDGSSLTSQNREEVNDEGEPSLITTKEEVYDDGASVLEPIATRVVDEEGSEVKVKSAFDELPNGSSHEDGGKEFSVVGARNEGEILDEDETDDVKYSVMISESGVDVVNEKLEEPVSMDETANSTGAGKEGEDDRSTHRVTGSNREILDENEVKKEKVNLDCDEETTGELQNTNGGHQVEILDNKSEKPNDDCNLTNPDAKFADKESWELEDSTASSKSRSENVEGDDLSYSSAQKEHMDYNVKEVNNASVAVDSGDNGDTSDASTVNLERNGLTMSEVKYNSADLPKTVDITEVEVQNGTLSPPNVNNEKTVKIQDVKTGLIATDNHIDKSQQLDDYDKSSISVEKLEKAEGKVQEENQGTRPNTDVGIRPSPNLPLSSKKVSNPAPSPARPAGLGRAAPLLEPALRMAQQPRVNGNSSHMQSQQVEDSSNGEAEENDETREKLQMIRVKFLRLAYRLGQTPHNVVVAQVLYRLGLAEQLQGRSGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFGIDAFQIGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRLIKKTPPDIVLYLDRLDVQNRDFSDMPLLRTITDIFGPSIWFNAIVVFTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGRPFTARSRAPPLPFLLSSLLQSRPQVKLPEEQFADGDDIEDELDESSDSEEESEYDELPPFKRLTKAQVSKLSKVQKKAYFDELEYREKLFMKKQLKEEKRRRKMMKKMAAQIRDLPSDYTENVEEESNGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINVEKLFVVKERIPLSFSGQVTKDKKDANLQMEMTSSIKHGEGKATSFGFDMQTVGKDLAYTLRGERIFCNFWKNKAIAGISATLLGDTLSGGVKVEDKLIASKRFRLVIAGGAMTSRGDVAYGGSLEAQLRDKEYPLGRSLSTLGLSVMDWHGDLAIGCNLQSQIPIGRSTTLIGRANLNNRGAGQVSIRLNSSEQLQIALLGLVPLVKKIFGYHQQL 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4942267 4945965 - Bma016890.1 Bma03g00599 79272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00599 1232 MobiDBLite consensus disorder prediction 196 359 - -
Bma03g00599 1232 ProSiteProfiles AIG1-type G domain profile. 602 831 IPR006703 GO:0005525
Bma03g00599 1232 MobiDBLite consensus disorder prediction 501 520 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 337 359 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 858 889 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 270 332 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 501 530 - -
Bma03g00599 1232 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 456 1230 IPR045058 -
Bma03g00599 1232 Pfam AIG1 family 605 738 IPR006703 GO:0005525
Bma03g00599 1232 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 456 1230 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 438 486 - -
Bma03g00599 1232 CDD Toc34_like 574 822 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 43 69 - -
Bma03g00599 1232 Pfam Translocase of chloroplast 159/132, membrane anchor domain 963 1226 IPR024283 -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 863 884 - -
Bma03g00599 1232 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 481 1228 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Bma03g00599 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 739 IPR027417 -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 215 253 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 43 111 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 254 269 - -
Bma03g00599 1232 MobiDBLite consensus disorder prediction 447 475 - -
Bma03g00599 1232 Gene3D - 575 822 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00599 - - - cmo:103490300 1340.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00599 Bma08g00616 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00599 Bma-Chr3:4942267 Bma15g00543 Bma-Chr15:6308839 0 dispersed
Bma03g00599 Bma-Chr3:4942267 Bma08g00762 Bma-Chr8:44616513 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00599 Bma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0