Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00601 ATCCAAATGAGTAATTCTTCTTTGTCACTTTACGAAGTTCTGGGGATTCCGGCAAGCGCGAGCTGCCACGAGATTAAATCGGCTTACAGAAGATTAGCCAGAATGTGTCATCCCGACGCCGTCGCTATAAACCAGAAGGAAAGTTCGGCTAATGAGTTTATGAAAATCCACGCAGCGTATTCAACATTATCAGACCCCGATAAAAGAGCGACTTACGATTTGGATCTTTTCCGGCATCGGAAGCCATTCGTTTCGTCGGTAGCAATGGCATCTGCTTCATCATCGGAGACTTTTTTTTCCGGTCATGTTGGCCGGAATTGGGAGACAGATCAATGTTGGTAG 342 45.91 IQMSNSSLSLYEVLGIPASASCHEIKSAYRRLARMCHPDAVAINQKESSANEFMKIHAAYSTLSDPDKRATYDLDLFRHRKPFVSSVAMASASSSETFFSGHVGRNWETDQCW 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4952437 4952778 + Bma016892.1 Bma03g00601 79274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00601 113 SUPERFAMILY Chaperone J-domain 5 76 IPR036869 -
Bma03g00601 113 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Bma03g00601 113 Pfam DnaJ domain 10 73 IPR001623 -
Bma03g00601 113 ProSiteProfiles dnaJ domain profile. 9 76 IPR001623 -
Bma03g00601 113 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 4 113 - -
Bma03g00601 113 PANTHER - 4 113 - -
Bma03g00601 113 Gene3D DnaJ domain 1 94 IPR036869 -
Bma03g00601 113 CDD DnaJ 11 65 IPR001623 -
Bma03g00601 113 PRINTS DnaJ domain signature 48 68 IPR001623 -
Bma03g00601 113 PRINTS DnaJ domain signature 29 44 IPR001623 -
Bma03g00601 113 PRINTS DnaJ domain signature 11 29 IPR001623 -
Bma03g00601 113 SMART dnaj_3 8 68 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00601 - - - jre:109006581 159.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00601 Bma08g00760 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00601 Bma-Chr3:4952437 Bma06g01272 Bma-Chr6:49809112 6.34E-17 dispersed
Bma07g01235 Bma-Chr7:47273462 Bma03g00601 Bma-Chr3:4952437 1.68E-21 transposed
Bma09g00005 Bma-Chr9:280080 Bma03g00601 Bma-Chr3:4952437 2.85E-14 transposed
Bma15g00942 Bma-Chr15:34710242 Bma03g00601 Bma-Chr3:4952437 2.20E-37 transposed
Bma01g02630 Bma-Chr1:83860153 Bma03g00601 Bma-Chr3:4952437 3.20E-11 transposed
Bma03g00601 Bma-Chr3:4952437 Bma05g00167 Bma-Chr5:4758856 1.85E-30 wgd
Bma03g00601 Bma-Chr3:4952437 Bma08g00760 Bma-Chr8:44594133 2.87E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00601 Bma_Chr03 FPKM 20.309525 19.641148 15.604869 15.787938 16.664415 16.458517 16.267427 13.939299 13.825356 13.008923