Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00607 TGGCGAGCGTCTTGTAGTTTCAAGGGGTTCGGGTTTTGTATGGAAACTCGGAGCCGGAAGCGGTTGGAGGCTACCTCAACAGCCCCTTCTTCTTCGTTGCCTGTTCCCCCTACCCGTTCAAACAAACGCGCTCGTCTTTCTGCTGCTTCGTCTCCCCATTCCAAACTTTCTGCCCCAGCTGCTTCATCAATTTCGACTAGGTCCCGTGCTTCCAGAGTTCAAGAACCAACCACTGCTACTACTCCAATGGACTCGACTAATGATTCATCTGGGTCACGCCGGCGTGGGAAGAACTCAGATAAGGATAATTCTGATAAGGGGAAGGAGAAAGAGCACGAGGTTGGAGGTAGGGATTTAGAAAGGGCCATCGAACGAACCTTAGGATTGAATATAGAAGTGCTTCCTTCATCATGTGCTGCAGTTGTGCATTATGGTGCAGTTTCATGCTTCTGTGCAAGGTTGTTGACAATAGAGTACATGGACTTGGCTGAACAGTCTTTGCAGGCTCTAAAAAAGATATCCCAGGAACACCCAACTGCCTGTTTGCGAGCTGGTGCTCTAATGGCTGTGCTTTCTTATCTGGAATTCTTCTCCACGGGAGTTCAGAGAGTAGCATTATCCACTGCTGCAAACATGTGCAAAAAGCTTCCTTCAGATGCAGCTGACTTTGTTATGGAAGCTGTGTTGGAGCACGCCTCAATTTGTTTGACTCGAATTGCTGAAGCATTTGCATCATCTCCTGATAAATTAGATGAATTGTGTAATCATGGTCTGGTGGCGCAAGCTGCCTCACTTATATCTGCCAACAATTCTGGCGGTGGTCAGGCATCTCTCAGCACACATACTTACACAGGTTTAATTAGACTTCTTTCCACCTGTGCAAGTGGGTCTCCATTGGGGGCTAAAACACTTCTTCTTCTTGGAATCAGTGGCATTCTAAAAGATATTCTATCCAGTTCTGGCACCTCTGCAAATGCATCTGTTTCCCCTGCTTTAAATAGGCCGCCAGAGCAGTTGAATATTCTTGTAGTATTATTGGTTGTTTTTTTTTTAAATAGTGCAAGCTCAATTTTTGAAATTGTCAACCTGGCAAATGAGCTTCTACCACCACTACCCCAAGGAATTATATCCCTTCCTGCCAGCCTTTTGTTTGTGAAAGGATCTGCAATGAAAAAGTCTTCAGCTAGTGGTTCTGAGAAACAAGAAGAATCAAATGGTTTGCCTTCTGAGTTCTCAGCTCGTGAGAAACTCTTGAATGATCAACCTGAGCTTCTTCAGCAATTTGGAATGGATCTTCTTCCAATTCTAATACAGATCTATGGGTCAAGCGTCAATGGTCCTGTCCGCCACAAATGTCTCTCAGTGATTGGGAAATTGATGTTCTTCAGTTCTTCAGAGATGATCCAGGCTCTATTAAATATAACAAATATATCAAGTTTCTTAGCCGGTGTTTTAGCATGGAAAGATCCACATGTCTTGATTCCTGCTCTTCAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGAAACTTTTGCAAAGATGTTTATTAGAGAAGGTGTCGTCCATGCTGTAGACCAACTTATCTTAGTTAATACTCCAAACAGTATTCCTGCGCAAGTATCTTCTGCTGAAAAGGATAATGATCCTGGAACTGCTACATCATCTCGGACAAGGCGGTACAGGCGACGCAACAGTAATGCAAATCCAGATGGAAATACATTGAATGAATCTAAGAATACTACTAGCAATGTTGGTTCACCTCTAAGCTCAGTAGAAGCTCCGTCTGTTAATTCCAACATTCGAACAGCAGTCAGTGGTTGTGCTTCTGCGTTCAAGGATAAGTACTTCCCTTCACATCCCGGAGCCGCTGACGTTGGAGTGACAGACGATCTTTTGCATTTAAAAAATATTTGCTTGAAGCTAAATTTGGGTATTGATGAACAACGAGCTGCAGGGAAGTCAAAAGCCTCAGAGTCTCGCCTGGTTGATAACTCTTTAAATAAGGAAGAATACTTATCTGGTGTTATATCAGAGATGCTAGTTGATCTTCGCAAAGGGGATGGTGTGTCCACTTTTGAGTTTATTGGAAGTGGGGTTGTTTCAGCTTTGCTGAATTATTTTTCTTGTGGATACTTTTTGAAGGAAAAAATTTCGGAAGCTAATCTGCCAAAGCTTCGTCAGCAGGCACTTAAAAGATTCAAATCATTTGTTGCTGTTGCACTGCCTTCCAATGCCCCTGAGGGGACTTTGGCACCAATGGCTGTTCTAGTTCAGAAACTTCAAAATGCTTTATCCTCCTTGGAGCGTTTTCCTGTCGTCTTAAGGCAGTCATCTAGGCCATCTAGTGGAAGTGGTCGTCTTTCCTCTGGTCTGAGTGTGTTATCTCAACCGTTGAAGTTGCGACTCTGTCGAGCTCATGGAGAGAAATCTCTCCGTGATTATTCATCAAACATTGTGATCATTGATCCCTTAGCAAGTTTAGCAGCAGTTGAAGAGTTTCTTTGGCCTCGTGTACAGCGAGGTGAAGCTGTTGGTCAAGAGCCTACATTATCTGCCGGAAATTCAGAGTTGGGAACGTTGGCCGGTGCTTCATCTCCATTGACTGCCACTCCTTCCACTACTCGCCGGCACTCTACTAGGTCTAGGTCGTCGGTGACCATAGGAGATGGGGGTGACAAGGAATTATCAGAAGAGAAAAGTGCAAGTTTATCAAAAGGAAAAGGTAAGGCTGTTATGAAGCCTGCGCTGGAGGAGGCAAGAGGGCCTCAAACTAGGAATTCTTCTCGTAGAAAAGAAGCTTTAGACAAGGATGCTCTGAAACCTGTCAGTGGGGACACTACGTCTGAGGACGAGGAACTAGATGTATCTCTTGTTGAGATTGACGACACATTAGTTATTGAAGACGAAGTTATCTCGGATGACGAAGATGATGAACATGATGAGGTCCTAGGAGATGACTCTCTTCCTGCTTGTATGCCTGAAAAAGTACATGATGTTAAGTTAGGCGATGCAGCTGATGAAAGTAATGTTGCGCAAGCAACTGGTGATAGCAAGGTCAACCCTGCTTCTGGTTCAAGTAGCCGAGTTTCTACAGTTAGGGGCTCAGATTCTACTGATCAGAGGAGTAGCAATTCTCATGGTTCACGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGTCTTCAATCTGCTAGTAGTAGAGGTTCTAGAGGCGGACGAGACAGATATGGCCGTCCTCTCTTTGGTAGCTCTAGTGATCCACCAAAGTTGGTCTTTACTTCCGGTGGGAAGCAACTTAATAGGCATTTAACCATTTACCAGGCTGTCCAACGGCAACTTGTGTTGGATGAGGATGATGACGAGAGATATGCTGGTAGCGATTTCTTGTCTAGTGATGGAAGTAGACTATGGAGTGATATATATACTATCACATACCAAAGAGCAGAAAATCAAGATATAAATTCTACCGGGGCTTCAAATACTGCAGTAGCGTCAAAATCTTCAAAATCTGGATCTGCTTCTGATTCTAACCCTAGTTCTCAATTGCAGAGGGTATCACTTCTGGATAGCATTTTGCAGGCCGAGCTTCCTTGTGATATGGAGAAGTCTAGTCCTACCCATAGTATATTGGCATTGTTGCGTGTTTTGGACAGTTTGAATCAACTTGCACCACGTTTGAGAGCACAGATAGTATCTGATCATTTTGCAGAGGGTAATATCTTCAGTCTAGATGAGCTATGCGCTACTGGTGTGAGGGTCCCACCTGATGAGTTTATTAATAGCAAGCTCACTCCTAAATTAGCGCGACAAATTCAAGATGCCCTTGCATTATGCAGTGGAAGTCTCCCCTCATGGTGTTATCAGTTGACAAAAGCTTGTCCATTCTTGTTTCCTTTTGAAACCCGACGACAGTATTTCTATTCTACTGCTTTTGGATTATCACGTGCTTTATATTGCCTTCAGCAGCAGCAGGGTGCTGATGGTCTTGGAATGGGAAATGAAAGAGAGGTGAGGGTTGGAAGGTTACAGCGCCAAAAAGTTCGTATATCTAGAAACCGTATTTTAGATTCTGCAGTGCAAGTAATGGAAATGTATTCTAGCCAAAAGGCAATGCTGGAAGTAGAGTATTTTGGGGAAGTGGGAACTGGGTTGGGTCCTACTCTTGAGTTTTATACACTTTTAAGTCATGATCTACAAAAAGCAAGTCTTGGAATGTGGAGATCAAATACTTCATCTGAGACATCTATGGAAATTGATGGAGTTGAACTGAAAGATGAAAAAGTGCACACTGCTGGATTTGGTTCCACGGGAGGCAATTCAGATTCCATACAAGCCCCACTTGGATTGTTCCCCCTCCCTTGGTCTCCGAATTCTGATGTTTCAGTCAGTAGCAAGTTTTCTAAAGTATTAGAGTATTTTCGTTTACTTGGGCGTGTGATGGCCAAAGCCCTTCAGGATGGGCGACTATTGGACCTACCACTGTCAACAGCATTCTATAAGCTGGTTCTTGGTCAAGAGCTCGATTTGCATGATATTCTTTCCTTTGATACTGAATTTGGCAAGATTTTACTAGAGTTGCATGCTATTGTTTGCCGTAAACGATACCTAGAATCAAGAAATGTTGATAACCAAGAAGCAGTTGTCAATTTGCGGTTTCGTGAGACTCCAATTGAAGATCTCTACCTGGATTTCTCACTTCCTGGTTACCCTGATTACATTTTGAAGCAGGGGGATGAAAGTGTTGATATAAAAAGCCTGGAAGAGTACATGTCCTTGGTAGTTGATGCTACAGTAAAGACGGGAATTATGCGACAAATCGAAGCATTTAGGGAAGGGTTTAACCAGGTGTTTGACATTGCTTCTTTGCAAGTATTTACCCCACATGAGTTAGATCATTTACTTTGTGGGCGGCGAGAGATGTGGGAGGCTGAAACCCTCGCTGATCACATAAAATTTGATCATGGATATACTGCAAAGAGCCCTGCCATAGTAAATTTACTGGAGATCATGGGAGAGTTCACTCATGAGCAGCAACGAGCCTTCTGCCAGTTTGTTACTGGCGCACCTCATCTTCCTCCTGGTGGTTTGGCTGTGCTGAACCCAAAACTTACAATTGTGAGAAAGCATTCTTCAACTGCTACTAATGCTACAACTAATGGAAATGGGTTGTCGGAAACATCAGATGATGACTTGCCTAGCGTTATGACCTGTGCTAATTATCTGAAGCTTCCTCCTTACTCAACCAAGGAAATCATGTACAAAAAACTAGTCTATGCAATCAGTGAAGGACAGGGATCTTTTGATCTTTCATGA 5316 43.49 WRASCSFKGFGFCMETRSRKRLEATSTAPSSSLPVPPTRSNKRARLSAASSPHSKLSAPAASSISTRSRASRVQEPTTATTPMDSTNDSSGSRRRGKNSDKDNSDKGKEKEHEVGGRDLERAIERTLGLNIEVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLEFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVLEHASICLTRIAEAFASSPDKLDELCNHGLVAQAASLISANNSGGGQASLSTHTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSSSGTSANASVSPALNRPPEQLNILVVLLVVFFLNSASSIFEIVNLANELLPPLPQGIISLPASLLFVKGSAMKKSSASGSEKQEESNGLPSEFSAREKLLNDQPELLQQFGMDLLPILIQIYGSSVNGPVRHKCLSVIGKLMFFSSSEMIQALLNITNISSFLAGVLAWKDPHVLIPALQIAEILMEKLPETFAKMFIREGVVHAVDQLILVNTPNSIPAQVSSAEKDNDPGTATSSRTRRYRRRNSNANPDGNTLNESKNTTSNVGSPLSSVEAPSVNSNIRTAVSGCASAFKDKYFPSHPGAADVGVTDDLLHLKNICLKLNLGIDEQRAAGKSKASESRLVDNSLNKEEYLSGVISEMLVDLRKGDGVSTFEFIGSGVVSALLNYFSCGYFLKEKISEANLPKLRQQALKRFKSFVAVALPSNAPEGTLAPMAVLVQKLQNALSSLERFPVVLRQSSRPSSGSGRLSSGLSVLSQPLKLRLCRAHGEKSLRDYSSNIVIIDPLASLAAVEEFLWPRVQRGEAVGQEPTLSAGNSELGTLAGASSPLTATPSTTRRHSTRSRSSVTIGDGGDKELSEEKSASLSKGKGKAVMKPALEEARGPQTRNSSRRKEALDKDALKPVSGDTTSEDEELDVSLVEIDDTLVIEDEVISDDEDDEHDEVLGDDSLPACMPEKVHDVKLGDAADESNVAQATGDSKVNPASGSSSRVSTVRGSDSTDQRSSNSHGSRGAMSFAAAAMAGLQSASSRGSRGGRDRYGRPLFGSSSDPPKLVFTSGGKQLNRHLTIYQAVQRQLVLDEDDDERYAGSDFLSSDGSRLWSDIYTITYQRAENQDINSTGASNTAVASKSSKSGSASDSNPSSQLQRVSLLDSILQAELPCDMEKSSPTHSILALLRVLDSLNQLAPRLRAQIVSDHFAEGNIFSLDELCATGVRVPPDEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYCLQQQQGADGLGMGNEREVRVGRLQRQKVRISRNRILDSAVQVMEMYSSQKAMLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRSNTSSETSMEIDGVELKDEKVHTAGFGSTGGNSDSIQAPLGLFPLPWSPNSDVSVSSKFSKVLEYFRLLGRVMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDILSFDTEFGKILLELHAIVCRKRYLESRNVDNQEAVVNLRFRETPIEDLYLDFSLPGYPDYILKQGDESVDIKSLEEYMSLVVDATVKTGIMRQIEAFREGFNQVFDIASLQVFTPHELDHLLCGRREMWEAETLADHIKFDHGYTAKSPAIVNLLEIMGEFTHEQQRAFCQFVTGAPHLPPGGLAVLNPKLTIVRKHSSTATNATTNGNGLSETSDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4996965 5007123 + Bma016898.1 Bma03g00607 79280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00607 1771 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 124 1771 IPR045322 GO:0006511|GO:0061630
Bma03g00607 1771 MobiDBLite consensus disorder prediction 1157 1182 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 17 117 - -
Bma03g00607 1771 Gene3D Hect, E3 ligase catalytic domains 1286 1532 - -
Bma03g00607 1771 Pfam HECT-domain (ubiquitin-transferase) 1393 1771 IPR000569 GO:0004842
Bma03g00607 1771 MobiDBLite consensus disorder prediction 923 947 - -
Bma03g00607 1771 ProSiteProfiles HECT domain profile. 1370 1771 IPR000569 GO:0004842
Bma03g00607 1771 Gene3D Hect, E3 ligase catalytic domain 1642 1769 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 538 593 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 969 983 - -
Bma03g00607 1771 Gene3D - 119 355 IPR011989 -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 90 117 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 848 886 - -
Bma03g00607 1771 SMART hect_3 1360 1771 IPR000569 GO:0004842
Bma03g00607 1771 Gene3D - 415 535 IPR011989 -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 538 554 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 1010 1049 - -
Bma03g00607 1771 CDD HECTc 1346 1766 IPR000569 GO:0004842
Bma03g00607 1771 SUPERFAMILY Hect, E3 ligase catalytic domain 1339 1764 IPR035983 GO:0004842
Bma03g00607 1771 MobiDBLite consensus disorder prediction 566 593 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 1062 1093 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 1009 1049 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 23 89 - -
Bma03g00607 1771 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 124 1771 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 969 991 - -
Bma03g00607 1771 MobiDBLite consensus disorder prediction 847 955 - -
Bma03g00607 1771 SUPERFAMILY ARM repeat 127 528 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00607 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - zju:107427509 2386.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00607 Bma08g00752 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00607 Bma-Chr3:4996965 Bma04g00619 Bma-Chr4:5881197 1.90E-89 dispersed
Bma03g00607 Bma-Chr3:4996965 Bma08g00752 Bma-Chr8:43967032 1.14E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00607 Bma_Chr03 FPKM 0.0 0.0 0.195748 0.0 0.0 0.0 0.0 0.232704 0.51394 0.270738