Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma03g00609 | ATGGCTGAGGAGCAAGACGGCGGTCTTCAACAGGTGGTGGAGGAGGAGTTCACTGTGTGGAAAAAGAATACACCTTTCTTGTACGACCTTGTCATTTCCCACCCTCTTGAGTGGCCATCTCTTACCGTCCACTGGGTTCCGGCGGTCCCACAGCCGCGCCACTCCCTCCCATCTCTCGCCGCCCATAAGCTCGTACTCGGGACTCACACTTCGGAGGGCGTTCCGAATTTCCTCATGGTCGCCGAGGCTCTTTTACCCACAAAGTCTTTGGATACCCAAATCGATGATGGAGGGGAAAATGAAATTATCCCAAAGGTGGAGATAACCCAGAAGATACGTGTTGAAGGGGAGGTGAATCGAGCTCGGTGTATGCCGCAGAACTCGGGGATTGTTGGTGCTAAAACGAGTGGGTGCGATGTTTATATATTTGATTGCGATAAACAGAAGACGAAGCCTGCAGGAGGTGAATGCGACCCGGATTTGAGACTCATTGGTCACGACAAAGAGGGTTATGGGTTGTCTTGGAGCCCCTTTAAGGAAGGTTACCTCTTGAGTGGTTCAACTGATCATAAAATTTGTTTGTGGGATGTCTCTGCTACAGCTCAAGGCAATGTGCTTAATGCAATGAATGTCTTTGAGGCTCATGAAAGCGTGGTAGGAGATGTATCTTGGCATTCAAAGAATGAAAATTTGTTTGGTTCTGTGGGGGATGATTGTCAGCTGATAATTTGGGACTTGCGCACAAACAAAACATTGCACGTTGTCAAAGCTCATAAGGAGGAGGTGAACTATCTTTCCTTCAATCCATATAACGAATGGATCCTGGCTACAGCATCTTCAGACACTACTGTTGGTCTTTTTGATATGCGGAAGCTGACAGAACCCTTGCATGTTCTTAGTAGTCACACAGAGGAGGTGTTTCAGGTAGAATGGGACCCTTTGCATGAGACTGTGTTGGCTTCTTCTGCTGATGATAGAAGACTGATGATATGGGACCTCAACAGAATTGGGGATGAACAAGATGGAGATGCGGAAGATGGCCCTCCAGAGCTTCTATTTTCTCATGGAGGTCATAAAGCCAAGATATCGGATTTCTCATGGAACGAGCACGAGCCATGGGTCATTTCAAGCGTAGCTGAAGACAACTCCCTTCAGGTCTGGCAAATAGCTGAGAGTATTTATCGC | 1185 | 47.59 | MAEEQDGGLQQVVEEEFTVWKKNTPFLYDLVISHPLEWPSLTVHWVPAVPQPRHSLPSLAAHKLVLGTHTSEGVPNFLMVAEALLPTKSLDTQIDDGGENEIIPKVEITQKIRVEGEVNRARCMPQNSGIVGAKTSGCDVYIFDCDKQKTKPAGGECDPDLRLIGHDKEGYGLSWSPFKEGYLLSGSTDHKICLWDVSATAQGNVLNAMNVFEAHESVVGDVSWHSKNENLFGSVGDDCQLIIWDLRTNKTLHVVKAHKEEVNYLSFNPYNEWILATASSDTTVGLFDMRKLTEPLHVLSSHTEEVFQVEWDPLHETVLASSADDRRLMIWDLNRIGDEQDGDAEDGPPELLFSHGGHKAKISDFSWNEHEPWVISSVAEDNSLQVWQIAESIYR | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5010510 | 5012784 | - | Bma030980 | Bma03g00609 | 79282 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma03g00609 | 395 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 183 | 197 | IPR019775 | - | |
| Bma03g00609 | 395 | Pfam | WD domain, G-beta repeat | 352 | 387 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | Pfam | WD domain, G-beta repeat | 209 | 245 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | Pfam | WD domain, G-beta repeat | 250 | 288 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | Pfam | WD domain, G-beta repeat | 294 | 332 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 163 | 198 | - | - | |
| Bma03g00609 | 395 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 319 | 333 | IPR019775 | - | |
| Bma03g00609 | 395 | SMART | WD40_4 | 292 | 332 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | SMART | WD40_4 | 156 | 196 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | SMART | WD40_4 | 248 | 288 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | SMART | WD40_4 | 205 | 245 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | SMART | WD40_4 | 348 | 388 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 163 | 198 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 212 | 254 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | PANTHER | WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED | 1 | 395 | - | - | |
| Bma03g00609 | 395 | SUPERFAMILY | WD40 repeat-like | 107 | 389 | IPR036322 | GO:0005515 | |
| Bma03g00609 | 395 | PRINTS | G protein beta WD-40 repeat signature | 183 | 197 | IPR020472 | - | |
| Bma03g00609 | 395 | PRINTS | G protein beta WD-40 repeat signature | 275 | 289 | IPR020472 | - | |
| Bma03g00609 | 395 | PRINTS | G protein beta WD-40 repeat signature | 319 | 333 | IPR020472 | - | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 355 | 395 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | Gene3D | - | 2 | 395 | IPR015943 | GO:0005515 | |
| Bma03g00609 | 395 | Pfam | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 15 | 86 | IPR022052 | - | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 299 | 334 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 355 | 395 | - | - | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 299 | 334 | - | - | |
| Bma03g00609 | 395 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 255 | 290 | IPR001680 | GO:0005515 | |
| Bma03g00609 | 395 | PANTHER | WD40 REPEAT FAMILY | 1 | 395 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma03g00609 | K10752 | RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 | - | jre:108993430 | 652.899 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma03g00609 | Bma-Chr3:5010510 | Bma06g01288 | Bma-Chr6:49952920 | 6.51E-06 | dispersed | |
| Bma13g00005 | Bma-Chr13:102787 | Bma03g00609 | Bma-Chr3:5010510 | 4.79E-13 | dispersed | |
| Bma13g00122 | Bma-Chr13:1248001 | Bma03g00609 | Bma-Chr3:5010510 | 1.71E-12 | dispersed | |
| Bma03g00609 | Bma-Chr3:5010510 | Bma06g01256 | Bma-Chr6:49694216 | 8.20E-157 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g163 | . | . | . | . | . | . | . | . | Cmo19g00748 | Cmo11g01740 | . | . | . | . | Sed06g0381 | Cpe04g00592 | . | Bhi05g01715 | Tan02g0682 | Cmetu01g1199 | . | Hepe02g0425 | . | . | Cla02g00427 | Cam02g0436 | Cec02g0434 | Cco02g0452 | Clacu02g0437 | Cmu02g0432 | Cre02g0766 | Cone12ag1232 | . | . | . | . | Csa07g00100 | . | Cme01g01262 | Blo04g00567 | . | . | . | Bpe15g00813 | . | Bma03g00609 | . | . | . | . | Cma11g01381 | Cma19g00739 | . | Car19g00568 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi11g01200 | . | Chy01g00681 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010062 | 0 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 33 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bma03g00609 | Bma_Chr03 | FPKM | 5.148701 | 4.712725 | 8.592482 | 7.717999 | 35.851307 | 40.081322 | 33.647682 | 1.221517 | 0.842519 | 0.917631 |