Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00610 ATGAGTTTTGGGCTGTCATTGAACCAGAACGAAAGATTGACATGGGCTCTGCAAGAGCAAGTAAAGCAACAAGTTTCCTCAGTTTTGAAGAGAATAGAATTAAAAACAATGTTTTTATTAAGTCAAAAGGAAGAAGAAATAGTCCACGCGACGAAAAAGACGATGGAGCTGGAAGAATTTCTGAGAAAGCTAGAAACAGAGAACCAAATATGGCAAAGAGTTGCGCAAGAAAACGAAGCAATGGTCATCTCCCTAAACAACACGCTAGATCAAATGCGAGAAACAGCGTCTGGTTGCTTCCAAGACAACGCAGCAGAAGACGCCGAGTCTTGCTGCGATATGAACAACCAAAACGGAGAAACAGAGGAAGCTGCAATGGACGCAAACAGGGGAGGAAGAAAATGGCCGACGATTTGCAATAGCTGTAATTCTCGAAAATCGTGCATTATTTTTTTGCCTTGCAGGCACCTTTGCTCATGCAAAGCTTGCGAAGCCGTTCTCGATTCCTGCCCTGTCTGTTTCACGGGAAAGAGCACTAGCGTAGAGGCTTTGATTTTCTAG 561 43.67 MSFGLSLNQNERLTWALQEQVKQQVSSVLKRIELKTMFLLSQKEEEIVHATKKTMELEEFLRKLETENQIWQRVAQENEAMVISLNNTLDQMRETASGCFQDNAAEDAESCCDMNNQNGETEEAAMDANRGGRKWPTICNSCNSRKSCIIFLPCRHLCSCKACEAVLDSCPVCFTGKSTSVEALIF 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5022229 5022789 + Bma016900.1 Bma03g00610 79283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00610 186 Coils Coil 61 81 - -
Bma03g00610 186 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 9 185 - -
Bma03g00610 186 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 9 185 IPR017066 -
Bma03g00610 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 183 IPR013083 -
Bma03g00610 186 PIRSF SBP1_RNase_bind 5 186 IPR017066 -
Bma03g00610 186 Pfam Zinc finger, C3HC4 type (RING finger) 138 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00610 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - rcu:8270672 224.557
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00610 Bma05g00370 CCT
Bma03g00610 Bma12g00918 CCT
Bma03g00610 Bma08g00750 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00610 Bma-Chr3:5022229 Bma05g00370 Bma-Chr5:11668929 2.60E-47 dispersed
Bma12g00918 Bma-Chr12:40684957 Bma03g00610 Bma-Chr3:5022229 4.11E-49 wgd
Bma03g00610 Bma-Chr3:5022229 Bma05g00182 Bma-Chr5:5119900 1.07E-09 wgd
Bma03g00610 Bma-Chr3:5022229 Bma08g00750 Bma-Chr8:43957737 3.90E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g165 . Blo15g00383 Bda06g00475 Bda08g00991 Bpe07g00713 Bpe12g00123 Bma05g00370 Bma12g00918 Cmo19g00750 Cmo11g01742 . Cma20g00749 . Car20g00650 Sed05g2214 Cpe04g00594 Cpe15g00595 Bhi05g01710 Tan02g0680 Cmetu01g1717 . Hepe02g0423 . . Cla02g00425 Cam02g0434 Cec02g0432 Cco02g0450 Clacu02g0435 Cmu02g0430 Cre02g0764 Cone12ag1234 Cone8ag1287 . . Lsi10g00497 Csa07g00104 . Cme01g01259 . Blo13g00503 Bda15g01032 Bda14g00617 Bpe15g00811 Bpe05g00290 Bma03g00610 Bma08g00750 Sed01g0190 . . Cma11g01379 Cma19g00741 . Car19g00570 Cpe16g00319 . Bhi10g01845 Tan05g1129 Cmetu11g0473 . Hepe08g0296 . . Cla02g01170 Cam02g1249 Cec02g1259 Cco02g1297 Clacu02g1230 Cmu02g1196 Cre02g1513 Lsi11g01202 Csa02g01395 Chy01g00679 Cme11g00378
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004267 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00610 Bma_Chr03 FPKM 16.376324 17.773907 26.913908 26.340403 36.563797 36.8494 39.848217 32.507458 33.182789 31.163595