Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00613 ATGGCTGATTGCGAGCCGTTGCTCGGCCACCAAAGAGAGATTCCGGCGACTTACGACAAGCCCCCACGTGTCGCCTCTCTCGACATCTTTCGCGGCCTCTCTGTTTTTTTGATGATACTGGTTGACTATGGTGCTTCGGTTTTTCCGATCATTGCTCATTCACCATGGAATGGTCTTCACTTGGCTGATTTTATAATGCCTAGAGTAACAAAAAGAGGAGAAGCTACATGGCAGGCCATGCTTAGGGCCACCAAACTTTTTCTTTTAGGCCTTATACTTCAAGGTGGCTACTTCCATGGAATAAACTCTTTGTCATATGGTGTTGACATTGGAAGAATAAGGTGGCTTGGAATTTTGCAGAGAATATCTATCGGATACATTGTTGCTGCTTTATGTGAGATTTGGCTTACTCGTCAAAAAAGTCGAGAACCTGGAGTTTTCAAGAGTTATTACTGGCACTGGTGTGTTGCATTCTTACTGTTGGCAATATACTTGGGTTTATTGTATGGATTGTATGTCCCTGATTGGCAATTCAAAGCTTCATTATCGACCACTTCCTCATTCTCATCAAATGATACTCATGTTTACACGGTAAAATGTTCAGCAAGAGGTGATATCGGACCTGCCTGTAATGCTGCGGCAATGATTGATCGTTATGCTTTAGGTGTTGATCATTTATACGCCAAACCTGTTTATAGAAATCTAAAGGACTGCGATATGTCCACAAGCGGTCAAGTTCCTGAACATTCGCCTTCGTGGTGCCATGCCCCATTTGACCCTGAAGGAATTTTAAGTAGCTTACCTGCAGCTGTGACCTGCTTAATTGGACTTCAATATGGTCATGTTCTTGCTCATATTCAGGACCACAAAAATCGTTTAAAAAAAATTTCCTCGTTCTCAATTGCAATTTTCGTTCTCGGACTCTTTGCTGCCTCGATAGGCATGGCTCCGAATAAATCATTATATACACTCAGTTATATGCTGATTACCTCTGCCTCTGCAGGAATAACTTTTTCTGCTGTGTATTTTTGGGTGGATGTTTTGGGTTACAGACTCATGACTTGTGTGTTCGATTGGATCGGAAAGCATGATGTGTTGGAAGAGGGACATGGCAACAAGGACTACGTCGACCCTCCTCCTGCGCCACTTATCGACATTGGCGAGCTCAAGCAATGGTCTTACTACAGAGCCCTCATCGCAGAGTTCATCGCCACCCTTCTCTTCCTCTACGTTTCTGTAGCCACTGTCATCGGCAATTTCAAGCAACTTGGCGACTGTAACGGCGTCGGACTTCTGGGTATCGCTTGGGCCTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGTATTTCTGGTGGTCATATCAATCCGGCGGTAACTTTCGGGCTGTTTTTGGCTAGGAAAGTGTCGCTTATTCGAGCTGTGGCGTACATGGTGGCTCAATGTCTGGGAGCCATCGTCGGCGTCGGGTTGGTCAAGGCCTTCATGAAGCACGACTACAACCAAAACAACGGAGGAGTTAACGTCGTTAACGATGGCTACAGCACCGGCACAGCTCTTGGTGCGGAGATAATCGGTACTTTCGTGCTTGTTTACACTGTTTTCTCCGCCACCGACCCAAAGAGGAGCGCTCGCGACTCTCACGTCCCTGTTTTGGCTCCACTGCCTATTGGGTTCGCCGTGTTCATGGTACACTTGGCTACCATTCCGATCACCGGAACTGGCATTAACCCTGCACGGAGCTTCGGAGCTGCTGTTATCTTCAACAACAAAAAAGCCTGGGATGATTGGATCTTCTGGGTGGGGCCTTTCATCGGGGCACTGGCTGCAGCGGTTTACCACCAGTACATTCTGAGAGCGGCAGCCATTAAAGCGTTGGGATCCTTCCGCAGCAATCCTAGCAACTACTAA 1917 47.16 MADCEPLLGHQREIPATYDKPPRVASLDIFRGLSVFLMILVDYGASVFPIIAHSPWNGLHLADFIMPRVTKRGEATWQAMLRATKLFLLGLILQGGYFHGINSLSYGVDIGRIRWLGILQRISIGYIVAALCEIWLTRQKSREPGVFKSYYWHWCVAFLLLAIYLGLLYGLYVPDWQFKASLSTTSSFSSNDTHVYTVKCSARGDIGPACNAAAMIDRYALGVDHLYAKPVYRNLKDCDMSTSGQVPEHSPSWCHAPFDPEGILSSLPAAVTCLIGLQYGHVLAHIQDHKNRLKKISSFSIAIFVLGLFAASIGMAPNKSLYTLSYMLITSASAGITFSAVYFWVDVLGYRLMTCVFDWIGKHDVLEEGHGNKDYVDPPPAPLIDIGELKQWSYYRALIAEFIATLLFLYVSVATVIGNFKQLGDCNGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAIVGVGLVKAFMKHDYNQNNGGVNVVNDGYSTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNKKAWDDWIFWVGPFIGALAAAVYHQYILRAAAIKALGSFRSNPSNY 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5030967 5037266 + Bma016903.1 Bma03g00613 79286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00613 638 ProSitePatterns MIP family signature. 456 464 IPR022357 -
Bma03g00613 638 Gene3D Glycerol uptake facilitator protein. 381 637 IPR023271 -
Bma03g00613 638 TIGRFAM MIP: MIP family channel proteins 400 615 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 CDD MIP 396 619 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 Pfam Major intrinsic protein 388 616 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PANTHER HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE ISOFORM X1 1 364 - -
Bma03g00613 638 SUPERFAMILY Aquaporin-like 388 621 IPR023271 -
Bma03g00613 638 PRINTS Major intrinsic protein family signature 396 415 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PRINTS Major intrinsic protein family signature 560 582 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PRINTS Major intrinsic protein family signature 438 462 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PRINTS Major intrinsic protein family signature 475 494 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PRINTS Major intrinsic protein family signature 599 619 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PRINTS Major intrinsic protein family signature 524 542 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00613 638 PANTHER LD22376P 1 364 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00613 Bma05g00373 CCT
Bma03g00613 Bma08g00749 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00613 Bma-Chr3:5030967 Bma08g01152 Bma-Chr8:50551770 9.22E-142 dispersed
Bma13g00614 Bma-Chr13:14486060 Bma03g00613 Bma-Chr3:5030967 6.52E-90 dispersed
Bma05g00373 Bma-Chr5:11918162 Bma03g00613 Bma-Chr3:5030967 1.50E-159 transposed
Bma03g00613 Bma-Chr3:5030967 Bma08g00749 Bma-Chr8:43945857 2.24E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00613 - - pper:18767296 984.556