Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00615 ATGAATCTTCTTCTTCACCTTCGGTTTTTTCTTCTTTTTTCTAATTATATTAGGTTGTTTCGTCTGTTTGTTTATGTTGTCGCTGATAATGGAGTCGACATAAGTAAATGCAGGAAGACAACAGGAAACATGCTGATGCAGAACCTGCTGGAGAGGCTAAGACCTCTTGTGGGTTTCAATGGCTGGGATTATTGTGTGCTCTGGAATTTGAGCCAAGACCAGAGGTACATTGAGTGGACGTGTTGCTGTTGTGGTGGGGCTGAGAGCATTAACCAAAACGACGCAGAAGAACTTCATTTTCCGGCGGTTGCATGCAGAGACACTATAATTCAGCACCCAAGATCCAACCCTTGCCATCTTCTTGCTTCATTGCCTTGTTCAATGCCTCTAGATTCTGATATTTACACCCAGACATTGTTGTCAAACCAGCCAAAATGGCTGAATCTCTCGTGTAGCTCAGATTCAACAGCAATCGAAGAAATCGCGGGGACTAAAGTTCTTATTCCAGTTGCATTCGGTATAATTGAGCTTTTCGTCGCTAAACAAATATCGGAAGATGAACAAGTCATAGATTTTGTCAAGTCTCAATACAATGTATCAATGGAGCAGGAGGCCATGGTTATTATTAATGTGGAAACAGATTTCTCAGTTGATCAAAAAGATTTGACGGATCAGACTAATTATTTTCACCCTCAACTTTCTCCGGCAACGTTGGAAAACTTGAATCTCAACTTTGTGCAACAATGCCATTTAGCCTCAGATAGCAGAACAAAGAACATGACCTTTCATGAAGGTCTGCAAGAAATAGAAGCATTTCAAAAGTCCCTGATGCACAACACATCAGACATTCATATGCAGATTATGGAGAATCTAGAAAATAAGGAAATGGAAGGTGATGATGATAAGGTGATAGTGAAGCTGAAGAATGGGAGGTTGGATTCATTATCAGACTGCAGTGATCAGATCGATGACGACGATGACGTAAAGTGCCATCGGAGAAACGAGCAAGAATACACTGCAAAGAACCTCATGGCAGAGAGAAAGAGAAGAAAGAAGCTAAACGATCGGCTTTACGAGCTGCGATCATTGGTTCCAAAAATTTCAAAGCTGGACAGAGCTGCAATACTTGGAGATGCAATCGACTTCATAAAGGAATTGGAGCAGCAAGCGAAAGAACTAGAGGATGAACTTCAACAACGTTCAGACGATATCGCCAACAATGGCAGCCATAGCATTGTACAAACAGATTTTCTAGGCCAAAATGGAGCTACCCATTGGCCGAACCAGTCCGACAACCATGGAGCTGCGAATAATTACGAATTCGGAACACAGAATAATGGAAAGACACTGAAACCAAATCAGGATTCTGAAAGTACAAATGAAAAATCACGGCAGATGGAGCCTCAAGTGGAAGTAGCTCAAATAGGTGACAATGAATTCTTTGTTAAAGTATTCTGTGAGAAAAAGCGTGGAGCGTTTATGAGGTTGATGGAGGCCTTCAACTCTCTGGGCATGGAAGTATCGAATGCAAATGTGACAAGCTATAGAGGCCTGGTGTCTAATGTTTTCAAAGTCTCGAAGAAAGACAGCGGAATGGTTCAAGCCGAACATGTGAGGGACTCGTTGCTCGAAATAACCCGGAATCCGACTAGAGGGTGGCCGAAAATGGATACTAATTCATCGGAAAATGGATGCTAA 1698 42.05 MNLLLHLRFFLLFSNYIRLFRLFVYVVADNGVDISKCRKTTGNMLMQNLLERLRPLVGFNGWDYCVLWNLSQDQRYIEWTCCCCGGAESINQNDAEELHFPAVACRDTIIQHPRSNPCHLLASLPCSMPLDSDIYTQTLLSNQPKWLNLSCSSDSTAIEEIAGTKVLIPVAFGIIELFVAKQISEDEQVIDFVKSQYNVSMEQEAMVIINVETDFSVDQKDLTDQTNYFHPQLSPATLENLNLNFVQQCHLASDSRTKNMTFHEGLQEIEAFQKSLMHNTSDIHMQIMENLENKEMEGDDDKVIVKLKNGRLDSLSDCSDQIDDDDDVKCHRRNEQEYTAKNLMAERKRRKKLNDRLYELRSLVPKISKLDRAAILGDAIDFIKELEQQAKELEDELQQRSDDIANNGSHSIVQTDFLGQNGATHWPNQSDNHGAANNYEFGTQNNGKTLKPNQDSESTNEKSRQMEPQVEVAQIGDNEFFVKVFCEKKRGAFMRLMEAFNSLGMEVSNANVTSYRGLVSNVFKVSKKDSGMVQAEHVRDSLLEITRNPTRGWPKMDTNSSENGC 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5045522 5047994 + Bma016905.1 Bma03g00615 79288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00615 565 MobiDBLite consensus disorder prediction 420 469 - -
Bma03g00615 565 Pfam Helix-loop-helix DNA-binding domain 343 387 IPR011598 GO:0046983
Bma03g00615 565 Coils Coil 376 403 - -
Bma03g00615 565 CDD bHLH_AtAMS_like 340 412 - -
Bma03g00615 565 Gene3D - 326 402 IPR036638 GO:0046983
Bma03g00615 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 401 IPR036638 GO:0046983
Bma03g00615 565 SMART finulus 343 392 IPR011598 GO:0046983
Bma03g00615 565 MobiDBLite consensus disorder prediction 420 454 - -
Bma03g00615 565 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 195 IPR025610 -
Bma03g00615 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Bma03g00615 565 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 555 - -
Bma03g00615 565 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 129 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00615 - - - qsu:111988783 550.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00615 Bma-Chr3:5045522 Bma14g01421 Bma-Chr14:26921993 8.64E-26 dispersed
Bma15g01082 Bma-Chr15:43172903 Bma03g00615 Bma-Chr3:5045522 1.84E-14 dispersed
Bma03g00614 Bma-Chr3:5040236 Bma03g00615 Bma-Chr3:5045522 3.67E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57009 PF14215 bHLH-MYC_N 4.70E-17 CL0161 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00615 Bma_Chr03 FPKM 0.64257 0.637738 1.394971 1.792552 0.699168 0.0 1.462854 2.085824 1.94713 2.000841