Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00616 ATGTTATCGAAATTGGCAAACTTTTTGAGGGCCTGTTTCCGGCCACGGTCAGAGGGATATGTCGGCTCGGATGCTGGAGGCAAACAGGATGGCCTGCTTTGGTACAAAGATAGCGGACAACATCTGAATGGTGAGTTTTCTATGGCTGTTGTTCAAGCCAACAATTTACTCGAGGATCAGAGCCAGATCGAATCAGGAAGTTTGAGCTTGAGTGAGTCTGGTCCTTACGGTGTATTTGTCGGTGTATATGATGGGCATGGAGGACCCGAGACATCTCGCTATATAAATGATCACCTCTTTCAGCACCTGAAAAGGTTCGCTTCTGAACACCAAACCATGTCTGTAGACGTAATTCGTAAGGCAATTCAAGCAACGGAGGAAGGATTTACGTCAGTCGTTACAAAACAATGGCCAATGAAGCCGCAAATTGCAGCTGTCGGATCTTGCTGTCTTGTCGGGGTTATATGCGGTGAATATCTTTATGTCGCCAATCTTGGTGATTCTCGTGCCGTTTTGGGAAAAGTCGTTAAAGCTACAGGGGAGGTTCTTTCGATCCAACTGTCAGCCGAACACAATGCAAGCATAGAATCTGTGAGACAAGAGCTGCAATCTTTGCATCCTGATGACTCCCAGATTGTCGTCTTGAAGCATAACGTCTGGCGTGTTAAGGGCCTTATTCAGGTTTCTCGATCTATTGGCGACGTGTATCTGAAAAAACCCGAGTTCAATCGGGAGCCTCTGTATGTAAGGTTTCGACTTCGTGAGTCTTTCAAGAAGCCAATTTTGAGCGCTGAACCATCCATTTCTGTTGTTCGGTTGGAACCCGAAGATCAATTTATTATATTTGCATCGGATGGCCTTTGGGAACACTTTACCAATCAGGAAGCAGTTGATATAGTTCAGAAACAACCACACAGTGGGAGTGCAAGGAGGCTGGTGAAAGCTGCTCTGCACGAAGCAGCAAAGAAGAGGGAAATGAGATATTCGGATTTGAAGAAGATCGACAGAGGGGTACGAAGGCATTTCCATGATGATATCACCGTGATTATCGTCTTTCTCGACTCCAACCTCATATGCAGGGCGAGCTCGGGAAAGAGCCCGAGTGTCTCAGTGAGAGGGGGTGGAATCCATCTCCCTCACAACACCTTGGCTCCTTTTGCTGCACCACCTGAATCTGGAGGTACCTGA 1188 46.97 MLSKLANFLRACFRPRSEGYVGSDAGGKQDGLLWYKDSGQHLNGEFSMAVVQANNLLEDQSQIESGSLSLSESGPYGVFVGVYDGHGGPETSRYINDHLFQHLKRFASEHQTMSVDVIRKAIQATEEGFTSVVTKQWPMKPQIAAVGSCCLVGVICGEYLYVANLGDSRAVLGKVVKATGEVLSIQLSAEHNASIESVRQELQSLHPDDSQIVVLKHNVWRVKGLIQVSRSIGDVYLKKPEFNREPLYVRFRLRESFKKPILSAEPSISVVRLEPEDQFIIFASDGLWEHFTNQEAVDIVQKQPHSGSARRLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIIVFLDSNLICRASSGKSPSVSVRGGGIHLPHNTLAPFAAPPESGGT 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5088697 5091052 + Bma016907.1 Bma03g00616 79289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00616 395 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Bma03g00616 395 Gene3D - 34 361 IPR036457 -
Bma03g00616 395 SMART PP2C_4 37 351 IPR001932 -
Bma03g00616 395 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Bma03g00616 395 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 385 - -
Bma03g00616 395 Pfam Protein phosphatase 2C 78 323 IPR001932 -
Bma03g00616 395 CDD PP2Cc 46 353 IPR001932 -
Bma03g00616 395 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Bma03g00616 395 PANTHER ALPHABET, ISOFORM E-RELATED 5 385 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00616 Bma12g00917 CCT
Bma03g00616 Bma08g00611 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00616 Bma-Chr3:5088697 Bma08g00611 Bma-Chr8:38538594 0 dispersed
Bma12g00221 Bma-Chr12:2919914 Bma03g00616 Bma-Chr3:5088697 3.33E-25 dispersed
Bma03g00947 Bma-Chr3:10028382 Bma03g00616 Bma-Chr3:5088697 0 transposed
Bma04g00474 Bma-Chr4:3985294 Bma03g00616 Bma-Chr3:5088697 9.38E-112 transposed
Bma04g01123 Bma-Chr4:27103114 Bma03g00616 Bma-Chr3:5088697 3.36E-115 transposed
Bma08g00966 Bma-Chr8:48642062 Bma03g00616 Bma-Chr3:5088697 8.56E-180 transposed
Bma12g00917 Bma-Chr12:40612620 Bma03g00616 Bma-Chr3:5088697 0 wgd
Bma03g00616 Bma-Chr3:5088697 Bma08g00745 Bma-Chr8:43881409 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00616 - K01102 qsu:112028133 658.292