Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00617 ATGGGCGTCGAACCAAACAATCACGACATGGAGGAGGGAATGCTGGAGGTTGGCATGGAGTACAGAACCGTTTCTGGGGTTGCTGGACCTTTGGTCATCCTAGATAAAGTTAAGGGACCCAAATTCCAGGAAATTGTTAATATTCGCTTAGGCGATGGAACAACCCGACGTGGCCAAGTTCTAGAAGTTGATGGGGAGAAAGCTGTTGTTCAGGTTTTTGAAGGAACTTCTGGAATTGACAATAAGTATACAACTGTGCAATTCACTGGAGAGGTTTTGAAAACCCCAGTCTCATTGGATATGCTTGGCCGCATATTTAATGGCTCCGGAAAGCCCATTGATAATGGTCCCCCGATTTTGCCTGAGGCATACTTGGATATTTCTGGTGAGTTCTTAGGGATGTCAATCTGTCATTCCTTTTGTTTTCTAATGTGTAGGTATTTTACTCTCTTTTCTACACCAGGGAGCTCCATCAACCCGAGTGAGAGAACATATCCAGAAGAGATGATACAGACTGGGATTTCGACGATTGACGTTATGAATTCCATTGCTAGAGGACAGAAGATTCCACTTTTCTCAGCTGCTGGTCTTCCTCATAATGAAATTGCTGCTCAAATATGTCGGCAGGCTGGTTTAGTCAAACGGTTAGAGAAATCAGATAATCTTCTTGGGGATGCAGAAGAAGACAACTTTGCTATTGTTTTTGCAGCTATGGGTGTAAACATGGAAACTGCGCAGTTTTTCAAACGAGATTTTGAAGAAAATGGATCAATGGAGAGAGTGACCCTTTTTCTGAATCTTGCTAATGATCCTACGATTGAGCGTATTATTACTCCGCGAATTGCTCTTACTACGGCTGAGTATTTGGCTTATGAATGTGGAAAGCATGTTCTTGTCATTCTGACTGACATGAGCTCCTATGCAGATGCTCTTCGTGAGGTGTCAGCTGCTCGGGAGGAAGTACCTGGAAGGCGTGGGTATCCTGGTTATATGTATACTGATCTGGCCACAATATATGAGCGTGCTGGACGAATCGAGGGACGAAAAGGGTCCATCACCCAAATTCCAATTCTAACTATGCCTAATGATGATATCACACATCCGACCCCAGATCTTACTGGATATATTACGGAGGGACAAATATACATTGATAGGCAGCTACATAACCGTCAGATTTATCCGCCAATCAACGTCCTGCCTTCCTTATCTCGTCTCATGAAGAGTGCTATTGGTGAGGGAATGACACGTAGGGATCATGCCGATGTATCCAACCAGCTCTATGCAAATTACGCGATTGGGAAGGACGTTCAAGCAATGAAAGCTGTGGTCGGAGAAGAAGCTCTTTCTTCTGAAGACCTGCTTTATCTGGAATTCTTGGACAAATTTGAGAGGAAGTTTGTCACACAAGGAGCCTACGACACCCGTAATATCTTCCAATCACTTGATTTAGCATGGACTTTGCTTCGAATTTTTCCTCGCGAACTCCTCCACCGTATACCGGCAAAGACCCTCGATCAGTACTACAGCCGAGAAACAGCTAATTAA 1545 44.08 MGVEPNNHDMEEGMLEVGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGEFLGMSICHSFCFLMCRYFTLFSTPGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLGDAEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRETAN 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5093699 5097037 + Bma016908.2 Bma03g00617 79290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00617 514 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Bma03g00617 514 Hamap V-type ATP synthase beta chain [atpB]. 18 512 IPR022879 -
Bma03g00617 514 CDD ATP-synt_V_A-type_beta_C 413 507 - -
Bma03g00617 514 Gene3D - 13 141 - -
Bma03g00617 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 409 IPR027417 -
Bma03g00617 514 ProSitePatterns ATP synthase alpha and beta subunits signature. 394 403 IPR020003 GO:0005524
Bma03g00617 514 Gene3D - 149 514 - -
Bma03g00617 514 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 132 - -
Bma03g00617 514 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 153 514 - -
Bma03g00617 514 CDD V_A-ATPase_B 92 405 - -
Bma03g00617 514 PIRSF V-ATPsynth_beta/V-ATPase_B 149 514 IPR022879 -
Bma03g00617 514 PIRSF V-ATPsynth_beta/V-ATPase_B 11 137 IPR022879 -
Bma03g00617 514 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 132 IPR022879 -
Bma03g00617 514 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 153 514 IPR022879 -
Bma03g00617 514 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Bma03g00617 514 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 173 403 IPR000194 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00617 Bma08g00610 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00617 Bma-Chr3:5093699 Bma08g00610 Bma-Chr8:38513192 0 dispersed
Bma03g00617 Bma-Chr3:5093699 Bma15g00289 Bma-Chr15:2842200 3.89E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00617 K02147 - jre:108993406 929.087