Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00619 ATGGAATTTACCCGTAAGAAATCACTGAAATCCAGTCTCTCTTATAAGCATTCGGGTGGAAGAGGATCTAGCGAAGATTGCACTGAAGCGCTTCCCATTCTTCTGGATCATCAACCAGAATCAGGCGGTTCTATTCTTTCTTCTGATCGAGAAGTTATCCTCAAGATCGACGACGGAGATTCCTCCTCCGGGGCTTCCAGACACCGGAGGGAGGATTTTGATTTTATGCAACGATCCGATAATGAAATGGTGGAAGATCCACCGTCGAAGCTGATTGGCCAGTTTCTGCAGAAACAGAAAACGTCCGGGCAAGTGGAGTTGGATATGGATCTAGAAATGGAGGAGCTTCGTGATCATGGCAGAAATTTGCCTCCCGTGCCGGAGACTCCCATTTTTAATCCTTCTAGGGAGATTAAAGTATCGTTTCAGACAAACTCACCGGAGATTTCTAATAACGACTCGTTTCGCCGGCGATATAGAGAGTCTCAGGAGCAGGAAGAATTACGAGGACAGCAACCACAAGAGCAGCGACACCATCGACGGAGATCTTCGAATTTCAATAACAATGGCGACGATCAGGTCCTGAGGTGCACTTCAAACGCGTCGTTTCAGAGGGAAGCTTCTTTTCAGAGAAGATCCAGTCTCCTCAGGTTGAAAACAAAGTCCAGATTAATGGATCCTCCCAACGAACCGGACCGGCGGTCCGGTAGGGTTCCGAAGTCCGGGCAATTTCGATCTGGATTACTAGGAAAGCCTATCGATGACGAAGAAGATGACCCATTTTTCGACGAAGATCTTCCCGACGAGTATAAAAGAGCTAACCTCAGCGTTATTACTATACTCCAATGGGTGAGCTTGGTTATGATAATGGCTGCTCTAATTTGCACTCTCTCCATTTCCGATTTAAGGAAAGTAATCCTTTGGAAGCTCAAGCTATGGAAATGGGAGCTGATGATTCTGGTTCTAATCTGCGGTCGATTAGTATCCGGCTGGGGAATCAGAATGGTCGTCTCCTTCATTGAAATGAACTTTCTCCTTCGTAAAAGGGTTCTATATTTCGTCTATGGAATCAGAAAACCAGTCCAGAATTGTCTCTGGTTAGGTCTAGTTTTAATAGTTTGGCATCTGCTTTTCGACAAGAGAGTAGAAGCTGAAACTAAAGGCAAGGCTCTCCGATATGTGACCAAGATACTGGTTTGCCTTCTCGTCGGATTCTTGATTTGGTTAGTGAAAACCCTAATGGTGAAAGTGTTAGCTTCTTCTTTCCATGTGAGTACTTACTTCGATCGGATCCAAGAATCGCTCTTCAACCAGTACGTAATCGAGACGCTCTCCGGACCACCGCTTATCGAAATTCAGACGAACGACGAAGACGAAGAGAAACTCGCCGACGAAATGCGGAAGTTGCAGAGCGCCGGAGTGACAATTCCGGCAGACCTGAAGAATACTGCATTCTCGACGTTAAAAAGCGGGAGAGTGATAGGGAGCGGAGGGCTGCCGAAAGGTCCGAGTCCGCCTGGAAAGAGCATGAAGCTTTCCAGCTCGATTACGAAGAAAGGAGATGATCAGGGAATCACCATTGATCACCTGCACAAGCTCAGTCCAAAAAATGTTTCCGCTTGGAATATGAAGAGGTTGATGAACATCGTTCGACATGGGACTATTTCTACTTTTGATGAACAGATTCTGGGTGCTACTTCTAGGCATGAAGATGACTCTGCAACTCAGATTCGAAGTGAGAGAGAAGCAAAGGCAGCAGCCAGGAAAATCTTCCAGAACGTCGCTCGCCATGGATTCAAATACATCTACCTTGAGGACTTGATGCGTTTCATGCGAGAAGACGAAGCCATGAAAGCCATGAGTCTCTTCGACGGAGCTTCAGAAAGCAGAATGCTAAGTAAATCCTCCCTAAAAAACTGGGTGGTGAATGCTTTCAGAGAGCGAAGAGCCCTAGCCTTAACCCTGAACGACACAAAAACAGCCGTTGACAAACTCCATAGAATAGTGAATTTCATCATAAGTATCGTTCTGATCGTCGTTTGGCTTCTCATACTGGAAATAGCAACAACCAAGTTTTTCCTCCTTGCCAGCTCTCAGCTCGTCCTCGCCGCCTTCGTCTTTGGAAACACCTGTAAAACTGTCTTCGAAGCTATCATCTTCTTGTTCGTCATACATCCCTATGATGTCGGCGACAGGTGCGAAATCGATGGAGTTCAGATGATCGTGGAAGAAATGAATATCTTGACAACTATTTTCCTGAGATACGATAATCAGAAGATTATATACCCAAACAGTGTTCTTTCAACCAAATCCATTCATAACTTTTACCGCAGTCCTGACATGGGCGACTCCATCGAGTTCTGCGTCCACGTATCGACTCCGGCCGAGAAAATTGCCGCCATAAGACAGAGAATATTGGCGTTTGTAGAGGGGAAGAAAGAGCATTGGTGTCCGAACCCGACGATTGTATTCAAAGAGTTGGAAGAGTTAAATAGGGTGAGATGTGCAGTCTGGCTTACTCACAGAATGAACCATCAAGACATGGGCGAGAGGTGGGCGAGGCGGGCGGGTTTAGTTGAAGAGATGGTTAAGATTTTCCGGGACCTCGATATTCAGTACCGCCTTTTCCCTCTCGACATAAACGTCCGATCACTACCTCCGGCATCCTCTTTCGAGATTCCGCCCAATCGGACTGCCATGGCTGGCTGA 2709 46.44 MEFTRKKSLKSSLSYKHSGGRGSSEDCTEALPILLDHQPESGGSILSSDREVILKIDDGDSSSGASRHRREDFDFMQRSDNEMVEDPPSKLIGQFLQKQKTSGQVELDMDLEMEELRDHGRNLPPVPETPIFNPSREIKVSFQTNSPEISNNDSFRRRYRESQEQEELRGQQPQEQRHHRRRSSNFNNNGDDQVLRCTSNASFQREASFQRRSSLLRLKTKSRLMDPPNEPDRRSGRVPKSGQFRSGLLGKPIDDEEDDPFFDEDLPDEYKRANLSVITILQWVSLVMIMAALICTLSISDLRKVILWKLKLWKWELMILVLICGRLVSGWGIRMVVSFIEMNFLLRKRVLYFVYGIRKPVQNCLWLGLVLIVWHLLFDKRVEAETKGKALRYVTKILVCLLVGFLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIQTNDEDEEKLADEMRKLQSAGVTIPADLKNTAFSTLKSGRVIGSGGLPKGPSPPGKSMKLSSSITKKGDDQGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTISTFDEQILGATSRHEDDSATQIRSEREAKAAARKIFQNVARHGFKYIYLEDLMRFMREDEAMKAMSLFDGASESRMLSKSSLKNWVVNAFRERRALALTLNDTKTAVDKLHRIVNFIISIVLIVVWLLILEIATTKFFLLASSQLVLAAFVFGNTCKTVFEAIIFLFVIHPYDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIYPNSVLSTKSIHNFYRSPDMGDSIEFCVHVSTPAEKIAAIRQRILAFVEGKKEHWCPNPTIVFKELEELNRVRCAVWLTHRMNHQDMGERWARRAGLVEEMVKIFRDLDIQYRLFPLDINVRSLPPASSFEIPPNRTAMAG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5110518 5113485 - Bma016910.1 Bma03g00619 79292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00619 902 MobiDBLite consensus disorder prediction 56 87 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 220 260 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 56 85 - -
Bma03g00619 902 SUPERFAMILY Sm-like ribonucleoproteins 716 775 IPR010920 -
Bma03g00619 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 891 IPR016688 -
Bma03g00619 902 MobiDBLite consensus disorder prediction 143 194 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 223 239 - -
Bma03g00619 902 PIRSF Memb_At2g17000 46 901 IPR016688 -
Bma03g00619 902 Pfam Mechanosensitive ion channel 667 871 IPR006685 GO:0016020|GO:0055085
Bma03g00619 902 MobiDBLite consensus disorder prediction 495 518 - -
Bma03g00619 902 Gene3D - 726 775 IPR023408 -
Bma03g00619 902 MobiDBLite consensus disorder prediction 1 26 - -
Bma03g00619 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 891 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 153 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00619 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1135.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00619 Bma-Chr3:5110518 Bma07g00558 Bma-Chr7:7598910 4.87E-176 dispersed
Bma12g00910 Bma-Chr12:40544786 Bma03g00619 Bma-Chr3:5110518 0 wgd
Bma03g00619 Bma-Chr3:5110518 Bma04g00265 Bma-Chr4:2189180 2.82E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01199 . 109 558 Mechanosensitive Ion Channel Family AT4G00290 57.0 4.0e-130 461.8
Bma06g01198 . 191 453 Mechanosensitive Ion Channel Family AT4G00290 55.8 1.6e-78 290.4
Bma02g00115 . 256 813 Mechanosensitive Ion Channel Family AT5G10490 58.3 3.5e-169 592.0
Bma01g01375 . 11 511 Mechanosensitive Ion Channel Family AT5G10490 59.5 3.5e-153 538.9
Bma02g00115 . 257 796 Mechanosensitive Ion Channel Family AT1G58200 55.7 4.8e-158 555.1
Bma01g01375 . 11 518 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-150 528.5
Bma12g00910 . 63 921 Mechanosensitive Ion Channel Family AT1G53470 54.2 2.9e-248 855.1
Bma03g00619 . 73 896 Mechanosensitive Ion Channel Family AT1G53470 55.9 6.0e-246 847.4
Bma12g00910 . 63 924 Mechanosensitive Ion Channel Family AT3G14810 52.6 3.0e-234 808.5
Bma03g00619 . 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.6 2.1e-227 785.8
Bma12g00910 . 63 922 Mechanosensitive Ion Channel Family AT1G78610 60.9 2.1e-280 961.8
Bma03g00619 . 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 2.5e-260 895.2
Bma12g00910 . 228 918 Mechanosensitive Ion Channel Family AT2G17000 59.8 3.3e-225 778.5
Bma03g00619 . 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.9 9.6e-225 776.9
Bma04g00115 . 16 775 Mechanosensitive Ion Channel Family AT5G19520 50.2 1.4e-195 679.9
Bma04g00115 . 61 775 Mechanosensitive Ion Channel Family AT5G12080 56.1 1.2e-210 729.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00619 Bma_Chr03 FPKM 17.452477 18.824518 10.036946 10.001155 6.083893 6.085166 6.932602 20.384151 21.879873 22.709368