Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00619 ATGGAATTTACCCGTAAGAAATCACTGAAATCCAGTCTCTCTTATAAGCATTCGGGTGGAAGAGGATCTAGCGAAGATTGCACTGAAGCGCTTCCCATTCTTCTGGATCATCAACCAGAATCAGGCGGTTCTATTCTTTCTTCTGATCGAGAAGTTATCCTCAAGATCGACGACGGAGATTCCTCCTCCGGGGCTTCCAGACACCGGAGGGAGGATTTTGATTTTATGCAACGATCCGATAATGAAATGGTGGAAGATCCACCGTCGAAGCTGATTGGCCAGTTTCTGCAGAAACAGAAAACGTCCGGGCAAGTGGAGTTGGATATGGATCTAGAAATGGAGGAGCTTCGTGATCATGGCAGAAATTTGCCTCCCGTGCCGGAGACTCCCATTTTTAATCCTTCTAGGGAGATTAAAGTATCGTTTCAGACAAACTCACCGGAGATTTCTAATAACGACTCGTTTCGCCGGCGATATAGAGAGTCTCAGGAGCAGGAAGAATTACGAGGACAGCAACCACAAGAGCAGCGACACCATCGACGGAGATCTTCGAATTTCAATAACAATGGCGACGATCAGGTCCTGAGGTGCACTTCAAACGCGTCGTTTCAGAGGGAAGCTTCTTTTCAGAGAAGATCCAGTCTCCTCAGGTTGAAAACAAAGTCCAGATTAATGGATCCTCCCAACGAACCGGACCGGCGGTCCGGTAGGGTTCCGAAGTCCGGGCAATTTCGATCTGGATTACTAGGAAAGCCTATCGATGACGAAGAAGATGACCCATTTTTCGACGAAGATCTTCCCGACGAGTATAAAAGAGCTAACCTCAGCGTTATTACTATACTCCAATGGGTGAGCTTGGTTATGATAATGGCTGCTCTAATTTGCACTCTCTCCATTTCCGATTTAAGGAAAGTAATCCTTTGGAAGCTCAAGCTATGGAAATGGGAGCTGATGATTCTGGTTCTAATCTGCGGTCGATTAGTATCCGGCTGGGGAATCAGAATGGTCGTCTCCTTCATTGAAATGAACTTTCTCCTTCGTAAAAGGGTTCTATATTTCGTCTATGGAATCAGAAAACCAGTCCAGAATTGTCTCTGGTTAGGTCTAGTTTTAATAGTTTGGCATCTGCTTTTCGACAAGAGAGTAGAAGCTGAAACTAAAGGCAAGGCTCTCCGATATGTGACCAAGATACTGGTTTGCCTTCTCGTCGGATTCTTGATTTGGTTAGTGAAAACCCTAATGGTGAAAGTGTTAGCTTCTTCTTTCCATGTGAGTACTTACTTCGATCGGATCCAAGAATCGCTCTTCAACCAGTACGTAATCGAGACGCTCTCCGGACCACCGCTTATCGAAATTCAGACGAACGACGAAGACGAAGAGAAACTCGCCGACGAAATGCGGAAGTTGCAGAGCGCCGGAGTGACAATTCCGGCAGACCTGAAGAATACTGCATTCTCGACGTTAAAAAGCGGGAGAGTGATAGGGAGCGGAGGGCTGCCGAAAGGTCCGAGTCCGCCTGGAAAGAGCATGAAGCTTTCCAGCTCGATTACGAAGAAAGGAGATGATCAGGGAATCACCATTGATCACCTGCACAAGCTCAGTCCAAAAAATGTTTCCGCTTGGAATATGAAGAGGTTGATGAACATCGTTCGACATGGGACTATTTCTACTTTTGATGAACAGATTCTGGGTGCTACTTCTAGGCATGAAGATGACTCTGCAACTCAGATTCGAAGTGAGAGAGAAGCAAAGGCAGCAGCCAGGAAAATCTTCCAGAACGTCGCTCGCCATGGATTCAAATACATCTACCTTGAGGACTTGATGCGTTTCATGCGAGAAGACGAAGCCATGAAAGCCATGAGTCTCTTCGACGGAGCTTCAGAAAGCAGAATGCTAAGTAAATCCTCCCTAAAAAACTGGGTGGTGAATGCTTTCAGAGAGCGAAGAGCCCTAGCCTTAACCCTGAACGACACAAAAACAGCCGTTGACAAACTCCATAGAATAGTGAATTTCATCATAAGTATCGTTCTGATCGTCGTTTGGCTTCTCATACTGGAAATAGCAACAACCAAGTTTTTCCTCCTTGCCAGCTCTCAGCTCGTCCTCGCCGCCTTCGTCTTTGGAAACACCTGTAAAACTGTCTTCGAAGCTATCATCTTCTTGTTCGTCATACATCCCTATGATGTCGGCGACAGGTGCGAAATCGATGGAGTTCAGATGATCGTGGAAGAAATGAATATCTTGACAACTATTTTCCTGAGATACGATAATCAGAAGATTATATACCCAAACAGTGTTCTTTCAACCAAATCCATTCATAACTTTTACCGCAGTCCTGACATGGGCGACTCCATCGAGTTCTGCGTCCACGTATCGACTCCGGCCGAGAAAATTGCCGCCATAAGACAGAGAATATTGGCGTTTGTAGAGGGGAAGAAAGAGCATTGGTGTCCGAACCCGACGATTGTATTCAAAGAGTTGGAAGAGTTAAATAGGGTGAGATGTGCAGTCTGGCTTACTCACAGAATGAACCATCAAGACATGGGCGAGAGGTGGGCGAGGCGGGCGGGTTTAGTTGAAGAGATGGTTAAGATTTTCCGGGACCTCGATATTCAGTACCGCCTTTTCCCTCTCGACATAAACGTCCGATCACTACCTCCGGCATCCTCTTTCGAGATTCCGCCCAATCGGACTGCCATGGCTGGCTGA 2709 46.44 MEFTRKKSLKSSLSYKHSGGRGSSEDCTEALPILLDHQPESGGSILSSDREVILKIDDGDSSSGASRHRREDFDFMQRSDNEMVEDPPSKLIGQFLQKQKTSGQVELDMDLEMEELRDHGRNLPPVPETPIFNPSREIKVSFQTNSPEISNNDSFRRRYRESQEQEELRGQQPQEQRHHRRRSSNFNNNGDDQVLRCTSNASFQREASFQRRSSLLRLKTKSRLMDPPNEPDRRSGRVPKSGQFRSGLLGKPIDDEEDDPFFDEDLPDEYKRANLSVITILQWVSLVMIMAALICTLSISDLRKVILWKLKLWKWELMILVLICGRLVSGWGIRMVVSFIEMNFLLRKRVLYFVYGIRKPVQNCLWLGLVLIVWHLLFDKRVEAETKGKALRYVTKILVCLLVGFLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIQTNDEDEEKLADEMRKLQSAGVTIPADLKNTAFSTLKSGRVIGSGGLPKGPSPPGKSMKLSSSITKKGDDQGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTISTFDEQILGATSRHEDDSATQIRSEREAKAAARKIFQNVARHGFKYIYLEDLMRFMREDEAMKAMSLFDGASESRMLSKSSLKNWVVNAFRERRALALTLNDTKTAVDKLHRIVNFIISIVLIVVWLLILEIATTKFFLLASSQLVLAAFVFGNTCKTVFEAIIFLFVIHPYDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIYPNSVLSTKSIHNFYRSPDMGDSIEFCVHVSTPAEKIAAIRQRILAFVEGKKEHWCPNPTIVFKELEELNRVRCAVWLTHRMNHQDMGERWARRAGLVEEMVKIFRDLDIQYRLFPLDINVRSLPPASSFEIPPNRTAMAG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5110518 5113485 - Bma016910.1 Bma03g00619 79292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00619 902 MobiDBLite consensus disorder prediction 56 87 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 220 260 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 56 85 - -
Bma03g00619 902 SUPERFAMILY Sm-like ribonucleoproteins 716 775 IPR010920 -
Bma03g00619 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 891 IPR016688 -
Bma03g00619 902 MobiDBLite consensus disorder prediction 143 194 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 223 239 - -
Bma03g00619 902 PIRSF Memb_At2g17000 46 901 IPR016688 -
Bma03g00619 902 Pfam Mechanosensitive ion channel 667 871 IPR006685 GO:0016020|GO:0055085
Bma03g00619 902 MobiDBLite consensus disorder prediction 495 518 - -
Bma03g00619 902 Gene3D - 726 775 IPR023408 -
Bma03g00619 902 MobiDBLite consensus disorder prediction 1 26 - -
Bma03g00619 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 891 - -
Bma03g00619 902 MobiDBLite consensus disorder prediction 153 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00619 Bma-Chr3:5110518 Bma07g00558 Bma-Chr7:7598910 4.87E-176 dispersed
Bma12g00910 Bma-Chr12:40544786 Bma03g00619 Bma-Chr3:5110518 0 wgd
Bma03g00619 Bma-Chr3:5110518 Bma04g00265 Bma-Chr4:2189180 2.82E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00619 K22048 - csv:101210264 1135.94